Variant report

Variant	rs11231528
Chromosome Location	chr11:63366389-63366390
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10792420	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10897438	0.98[ASN][1000 genomes]
rs10897439	0.81[ASN][1000 genomes]
rs11600655	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11601432	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2030731	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3809072	0.91[ASN][1000 genomes]
rs3809073	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs586713	0.95[ASN][1000 genomes]
rs59386292	0.81[ASN][1000 genomes]
rs627194	0.92[ASN][1000 genomes]
rs7101608	0.98[ASN][1000 genomes]
rs7111905	0.94[ASN][1000 genomes]
rs7115616	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7131579	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7940076	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11231528	HRASLS3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63343000-63376600	Weak transcription	Colonic Mucosa	Colon
2	chr11:63347800-63370200	Weak transcription	Psoas Muscle	Psoas
3	chr11:63348400-63366600	Weak transcription	HSMM	muscle
4	chr11:63350000-63375800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr11:63350200-63366800	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:63350200-63370000	Weak transcription	Small Intestine	intestine
7	chr11:63350200-63377000	Weak transcription	Hela-S3	cervix
8	chr11:63351800-63366800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:63352600-63367000	Strong transcription	H9 Cell Line	embryonic stem cell
10	chr11:63356800-63381000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:63357200-63366400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
12	chr11:63357200-63369600	Weak transcription	Fetal Muscle Leg	muscle
13	chr11:63357600-63380400	Weak transcription	NHLF	lung
14	chr11:63357800-63370200	Weak transcription	Pancreas	Pancrea
15	chr11:63357800-63374200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr11:63358400-63369800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr11:63358600-63366600	Weak transcription	Spleen	Spleen
18	chr11:63358600-63370600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr11:63358800-63377000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:63359600-63375800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:63361000-63369400	Weak transcription	Fetal Stomach	stomach
22	chr11:63361200-63376800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr11:63361600-63373200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:63362000-63378000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr11:63362800-63366400	Strong transcription	H1 Cell Line	embryonic stem cell
26	chr11:63362800-63366600	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:63363000-63366400	Strong transcription	Stomach Smooth Muscle	stomach
28	chr11:63363000-63377000	Weak transcription	Esophagus	oesophagus
29	chr11:63363200-63366400	Strong transcription	Skeletal Muscle Male	skeletal muscle
30	chr11:63363200-63369600	Weak transcription	HSMMtube	muscle
31	chr11:63363400-63366400	Weak transcription	Osteobl	bone
32	chr11:63363400-63369400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:63363400-63369600	Weak transcription	Colon Smooth Muscle	Colon
34	chr11:63364000-63369200	Weak transcription	Placenta	Placenta
35	chr11:63364400-63367800	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr11:63364400-63370800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr11:63364600-63376200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr11:63365200-63366400	Genic enhancers	Adipose Nuclei	Adipose
39	chr11:63365200-63366600	Genic enhancers	Brain Anterior Caudate	brain
40	chr11:63365400-63366400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:63365400-63366600	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:63365600-63367000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr11:63365600-63370800	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr11:63365600-63373400	Weak transcription	Gastric	stomach
45	chr11:63365800-63366400	Enhancers	Brain Cingulate Gyrus	brain
46	chr11:63365800-63368000	Enhancers	Brain Angular Gyrus	brain
47	chr11:63365800-63368400	Enhancers	Brain Hippocampus Middle	brain
48	chr11:63365800-63369200	Weak transcription	Ovary	ovary
49	chr11:63365800-63369600	Weak transcription	Aorta	Aorta
50	chr11:63365800-63370200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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