Variant report

Variant	rs7111905
Chromosome Location	chr11:63379349-63379350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63369471..63371233-chr11:63378331..63380556,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10792420	0.94[ASN][1000 genomes]
rs10897438	0.95[ASN][1000 genomes]
rs10897439	0.85[ASN][1000 genomes]
rs11231528	0.94[ASN][1000 genomes]
rs11600655	0.93[ASN][1000 genomes]
rs11601432	0.85[ASN][1000 genomes]
rs2030731	0.94[ASN][1000 genomes]
rs3809072	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3809073	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs586713	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59386292	0.85[ASN][1000 genomes]
rs627194	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs641638	0.84[ASN][1000 genomes]
rs7101608	0.95[ASN][1000 genomes]
rs7115616	0.95[ASN][1000 genomes]
rs7131579	0.98[ASN][1000 genomes]
rs7940076	0.81[ASN][1000 genomes]
rs7945579	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	esv32927	chr11:63377277-63387923	Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7111905	HRASLS3	Cis_1M	lymphoblastoid	RTeQTL
rs7111905	PLA2G16	cis	Muscle Skeletal	GTEx

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63356800-63381000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:63357600-63380400	Weak transcription	NHLF	lung
3	chr11:63371000-63380400	Weak transcription	Aorta	Aorta
4	chr11:63374600-63380200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:63374800-63380400	Weak transcription	K562	blood
6	chr11:63375800-63380200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr11:63375800-63380400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:63376400-63379400	Flanking Active TSS	Brain Cingulate Gyrus	brain
9	chr11:63376600-63379400	Flanking Active TSS	Adipose Nuclei	Adipose
10	chr11:63376800-63380400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr11:63376800-63380400	Enhancers	A549	lung
12	chr11:63377000-63380400	Weak transcription	Fetal Kidney	kidney
13	chr11:63377200-63380400	Weak transcription	GM12878-XiMat	blood
14	chr11:63377400-63379600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:63377400-63380400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr11:63377600-63379400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:63377800-63380400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:63377800-63380400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr11:63377800-63380400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:63377800-63381000	Weak transcription	Esophagus	oesophagus
21	chr11:63378000-63380200	Enhancers	Liver	Liver
22	chr11:63378000-63380400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:63378000-63380400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr11:63378000-63380400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr11:63378000-63380600	Weak transcription	Pancreas	Pancrea
26	chr11:63378000-63381000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr11:63378200-63380000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr11:63378200-63380400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr11:63378200-63380400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr11:63378200-63380400	Weak transcription	Placenta	Placenta
31	chr11:63378200-63380400	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr11:63378200-63380600	Weak transcription	Lung	lung
33	chr11:63378400-63380400	Weak transcription	Colonic Mucosa	Colon
34	chr11:63378400-63380400	Weak transcription	Right Ventricle	heart
35	chr11:63378400-63380400	Weak transcription	HSMM	muscle
36	chr11:63378400-63380600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:63378400-63380600	Weak transcription	Psoas Muscle	Psoas
38	chr11:63378400-63380800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr11:63378400-63381000	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr11:63378400-63381000	Weak transcription	Gastric	stomach
41	chr11:63378400-63381000	Weak transcription	Spleen	Spleen
42	chr11:63378400-63381000	Weak transcription	HMEC	breast
43	chr11:63378400-63382400	Active TSS	Brain Angular Gyrus	brain
44	chr11:63378400-63382400	Active TSS	Ovary	ovary
45	chr11:63378600-63379600	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr11:63378600-63379600	Enhancers	Osteobl	bone
47	chr11:63378600-63380400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr11:63378600-63380400	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr11:63378600-63380400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:63378600-63380400	Weak transcription	Fetal Muscle Leg	muscle

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