Variant report

Variant	rs7940076
Chromosome Location	chr11:63362763-63362764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10792420	0.83[ASN][1000 genomes]
rs10897438	0.85[ASN][1000 genomes]
rs11231528	0.83[ASN][1000 genomes]
rs11600655	0.80[ASN][1000 genomes]
rs2030731	0.83[ASN][1000 genomes]
rs586713	0.82[ASN][1000 genomes]
rs7101608	0.85[ASN][1000 genomes]
rs7111905	0.81[ASN][1000 genomes]
rs7115616	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7940076	PLA2G16	cis	Whole Blood	GTEx
rs7940076	HRASLS3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63343000-63363000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr11:63343000-63366200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr11:63343000-63376600	Weak transcription	Colonic Mucosa	Colon
4	chr11:63347800-63370200	Weak transcription	Psoas Muscle	Psoas
5	chr11:63348400-63366600	Weak transcription	HSMM	muscle
6	chr11:63350000-63375800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr11:63350200-63366800	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:63350200-63370000	Weak transcription	Small Intestine	intestine
9	chr11:63350200-63377000	Weak transcription	Hela-S3	cervix
10	chr11:63350800-63365600	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:63351000-63364200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:63351800-63366800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr11:63352400-63363000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:63352600-63367000	Strong transcription	H9 Cell Line	embryonic stem cell
15	chr11:63353200-63364000	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:63353400-63366200	Weak transcription	A549	lung
17	chr11:63354000-63366000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:63355200-63365800	Strong transcription	Lung	lung
19	chr11:63355200-63366200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:63355400-63366200	Strong transcription	Liver	Liver
21	chr11:63355600-63363200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
22	chr11:63356200-63363200	Genic enhancers	Brain Cingulate Gyrus	brain
23	chr11:63356800-63363000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:63356800-63381000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:63357200-63366400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
26	chr11:63357200-63369600	Weak transcription	Fetal Muscle Leg	muscle
27	chr11:63357600-63380400	Weak transcription	NHLF	lung
28	chr11:63357800-63370200	Weak transcription	Pancreas	Pancrea
29	chr11:63357800-63374200	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr11:63358200-63363000	Weak transcription	Osteobl	bone
31	chr11:63358200-63363600	Genic enhancers	Brain Inferior Temporal Lobe	brain
32	chr11:63358200-63364000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr11:63358400-63365200	Weak transcription	Aorta	Aorta
34	chr11:63358400-63369800	Weak transcription	Rectal Smooth Muscle	rectum
35	chr11:63358600-63365400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:63358600-63366600	Weak transcription	Spleen	Spleen
37	chr11:63358600-63370600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr11:63358800-63377000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr11:63359200-63363000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr11:63359600-63375800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr11:63360200-63363400	Genic enhancers	Brain Hippocampus Middle	brain
42	chr11:63360200-63365000	Weak transcription	Right Ventricle	heart
43	chr11:63360400-63363000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr11:63360400-63363600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr11:63360600-63366200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr11:63361000-63362800	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr11:63361000-63362800	Weak transcription	Placenta	Placenta
48	chr11:63361000-63362800	Weak transcription	Left Ventricle	heart
49	chr11:63361000-63363000	Weak transcription	Stomach Smooth Muscle	stomach
50	chr11:63361000-63363400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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