Variant report
| Variant | rs11231909 |
|---|---|
| Chromosome Location | chr11:64728885-64728886 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:64728080..64729823-chr11:64778498..64780871,2 | MCF-7 | breast: | |
| 2 | chr11:64727356..64729952-chr11:64739370..64742304,2 | K562 | blood: | |
| 3 | chr11:64691117..64693562-chr11:64726636..64728966,2 | K562 | blood: | |
| 4 | chr11:64689666..64692617-chr11:64726636..64729077,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000168070 | Chromatin interaction |
| ENSG00000068971 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs11231898 | 1.00[AMR][1000 genomes] |
| rs11231910 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11231914 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11231922 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11231924 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12270141 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12277345 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12281031 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12290575 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61741398 | 1.00[AMR][1000 genomes] |
| rs61746812 | 1.00[AMR][1000 genomes] |
| rs7111659 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv526181 | chr11:64638041-65257329 | Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 1539 gene(s) | inside rSNPs | diseases |
| 2 | nsv555208 | chr11:64645119-64771179 | Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 1029 gene(s) | inside rSNPs | diseases |
| 3 | nsv976460 | chr11:64727780-64743097 | Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:64728600-64736400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
