Variant report

Variant	rs12277345
Chromosome Location	chr11:64753083-64753084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11231898	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs11231909	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11231910	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11231914	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11231922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11231924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12272785	1.00[MKK][hapmap];1.00[YRI][hapmap]
rs12274449	1.00[YRI][hapmap]
rs12281031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12282348	0.85[YRI][hapmap]
rs12290575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61741398	1.00[AMR][1000 genomes]
rs61746812	1.00[AMR][1000 genomes]
rs7111659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv555208	chr11:64645119-64771179	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1029 gene(s)	inside rSNPs	diseases
3	esv32668	chr11:64743070-64758087	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64748000-64756400	Weak transcription	Lung	lung
2	chr11:64750200-64756600	Weak transcription	Colonic Mucosa	Colon
3	chr11:64750200-64757000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr11:64751400-64753200	Enhancers	Primary B cells from peripheral blood	blood
5	chr11:64752000-64756400	Weak transcription	Right Atrium	heart
6	chr11:64752400-64756200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:64752400-64764200	Weak transcription	Aorta	Aorta
8	chr11:64752600-64755000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr11:64752600-64755000	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr11:64752600-64755000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr11:64752600-64755200	Weak transcription	Primary B cells from cord blood	blood
12	chr11:64752600-64755400	Weak transcription	GM12878-XiMat	blood
13	chr11:64752600-64756800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:64752800-64755600	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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