Variant report

Variant	rs12281031
Chromosome Location	chr11:64757305-64757306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:64641742..64644629-chr11:64755120..64758066,2	MCF-7	breast:
2	chr11:64693891..64698050-chr11:64753803..64757942,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C11orf85-1	chr11:64755418-64757986	NONHSAT022046

Variant related genes	Relation type
ENSG00000110047	Chromatin interaction
ENSG00000068971	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11231898	1.00[AMR][1000 genomes]
rs11231909	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11231910	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11231914	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11231922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11231924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12277345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12290575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61741398	1.00[AMR][1000 genomes]
rs61746812	1.00[AMR][1000 genomes]
rs7111659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv555208	chr11:64645119-64771179	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1029 gene(s)	inside rSNPs	diseases
3	esv32668	chr11:64743070-64758087	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64752400-64764200	Weak transcription	Aorta	Aorta
2	chr11:64755000-64757400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:64755000-64764000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:64755200-64757400	Enhancers	Primary B cells from cord blood	blood
5	chr11:64755200-64757600	Enhancers	Primary B cells from peripheral blood	blood
6	chr11:64755200-64758200	Genic enhancers	Fetal Intestine Small	intestine
7	chr11:64755400-64757600	Enhancers	GM12878-XiMat	blood
8	chr11:64755400-64758200	Enhancers	Liver	Liver
9	chr11:64755600-64758200	Enhancers	Placenta	Placenta
10	chr11:64755800-64757600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr11:64756000-64757400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr11:64756000-64758000	Enhancers	Left Ventricle	heart
13	chr11:64756200-64757400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr11:64756200-64757400	Enhancers	Right Ventricle	heart
15	chr11:64756200-64761600	Weak transcription	Pancreas	Pancrea
16	chr11:64756400-64757400	Enhancers	Right Atrium	heart
17	chr11:64756400-64758000	Strong transcription	Gastric	stomach
18	chr11:64756400-64758000	Enhancers	Lung	lung
19	chr11:64756400-64758200	Enhancers	HepG2	liver
20	chr11:64756400-64764600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:64756600-64758200	Flanking Active TSS	Adipose Nuclei	Adipose
22	chr11:64756600-64758200	Genic enhancers	Fetal Intestine Large	intestine
23	chr11:64756600-64758200	Enhancers	Fetal Stomach	stomach
24	chr11:64756600-64758400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr11:64756800-64757600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr11:64756800-64758000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
27	chr11:64756800-64758000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr11:64756800-64758200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr11:64756800-64758400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr11:64756800-64763800	Weak transcription	Psoas Muscle	Psoas
31	chr11:64757000-64757400	Active TSS	Duodenum Smooth Muscle	Duodenum
32	chr11:64757000-64757400	Enhancers	Fetal Lung	lung
33	chr11:64757000-64757400	Enhancers	Spleen	Spleen
34	chr11:64757000-64757600	Enhancers	Colon Smooth Muscle	Colon
35	chr11:64757000-64757600	Flanking Active TSS	Duodenum Mucosa	Duodenum
36	chr11:64757000-64757600	Enhancers	HUVEC	blood vessel
37	chr11:64757000-64757800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
38	chr11:64757000-64757800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
39	chr11:64757000-64757800	Flanking Active TSS	Stomach Smooth Muscle	stomach
40	chr11:64757000-64758000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr11:64757000-64758000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
42	chr11:64757000-64758400	Enhancers	Primary hematopoietic stem cells	blood
43	chr11:64757000-64758400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:64757200-64757400	Enhancers	Rectal Mucosa Donor 29	rectum
45	chr11:64757200-64757600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:64757200-64757600	Flanking Active TSS	Colonic Mucosa	Colon
47	chr11:64757200-64757600	Enhancers	Fetal Heart	heart
48	chr11:64757200-64757800	Enhancers	Primary T cells from cord blood	blood
49	chr11:64757200-64757800	Flanking Active TSS	Fetal Muscle Leg	muscle
50	chr11:64757200-64757800	Enhancers	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links