Variant report

Variant	rs12282348
Chromosome Location	chr11:64908108-64908109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000162298	Chromatin interaction
ENSG00000249251	Chromatin interaction
ENSG00000254614	Chromatin interaction
ENSG00000149806	Chromatin interaction
ENSG00000014216	Chromatin interaction
ENSG00000204710	Chromatin interaction
ENSG00000255200	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11231914	0.85[YRI][hapmap]
rs12271615	1.00[ASW][hapmap]
rs12272785	0.85[YRI][hapmap]
rs12274449	0.82[YRI][hapmap]
rs12277345	0.85[YRI][hapmap]
rs12279247	1.00[AMR][1000 genomes]
rs12288247	1.00[ASW][hapmap]
rs35983251	1.00[AMR][1000 genomes]
rs56368078	1.00[AMR][1000 genomes]
rs57731342	1.00[AMR][1000 genomes]
rs7926131	1.00[AMR][1000 genomes]
rs7933704	0.86[AFR][1000 genomes]
rs7935441	1.00[AMR][1000 genomes]
rs7936473	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64903600-64911800	Weak transcription	Spleen	Spleen
2	chr11:64903600-64917400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:64903800-64908400	Weak transcription	HepG2	liver
4	chr11:64904000-64909400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr11:64904200-64913400	Weak transcription	Primary B cells from cord blood	blood
6	chr11:64904400-64908800	Weak transcription	Liver	Liver
7	chr11:64904400-64909400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr11:64905000-64909400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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