Variant report

Variant	rs12279247
Chromosome Location	chr11:64928988-64928989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12271615	0.95[AFR][1000 genomes]
rs12280476	0.87[AFR][1000 genomes]
rs12282348	1.00[AMR][1000 genomes]
rs12285030	0.87[AFR][1000 genomes]
rs12288247	0.87[AFR][1000 genomes]
rs12291307	0.84[AFR][1000 genomes]
rs35983251	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3782095	0.87[AFR][1000 genomes]
rs56368078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57731342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110646	0.89[AFR][1000 genomes]
rs7926131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7935441	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7936473	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897713	chr11:64915042-65000719	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64921200-64930600	Weak transcription	HepG2	liver
2	chr11:64924200-64936400	Weak transcription	Primary B cells from cord blood	blood
3	chr11:64927400-64948400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:64928400-64935200	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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