Variant report

Variant	rs7110646
Chromosome Location	chr11:64867303-64867304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:64860826..64865780-chr11:64866168..64869464,4	K562	blood:
2	chr11:64779401..64787584-chr11:64862745..64867550,9	MCF-7	breast:
3	chr11:64806669..64810557-chr11:64862016..64868359,8	K562	blood:
4	chr11:64860579..64868255-chr11:64873377..64881831,25	K562	blood:
5	chr11:64866821..64868378-chr11:64884153..64886306,2	K562	blood:

Variant related genes	Relation type
ENSG00000168061	Chromatin interaction
ENSG00000174276	Chromatin interaction
ENSG00000213465	Chromatin interaction
ENSG00000273003	Chromatin interaction
ENSG00000254501	Chromatin interaction
ENSG00000255173	Chromatin interaction
ENSG00000149809	Chromatin interaction
ENSG00000149823	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12271615	0.84[AFR][1000 genomes]
rs12279247	0.89[AFR][1000 genomes]
rs12280476	0.92[AFR][1000 genomes]
rs12285030	0.92[AFR][1000 genomes]
rs12288247	0.92[AFR][1000 genomes]
rs12291307	0.89[AFR][1000 genomes]
rs35983251	0.97[AFR][1000 genomes]
rs3782095	0.92[AFR][1000 genomes]
rs56368078	0.89[AFR][1000 genomes]
rs57731342	0.89[AFR][1000 genomes]
rs7926131	0.89[AFR][1000 genomes]
rs7935441	0.97[AFR][1000 genomes]
rs7936473	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897709	chr11:64772545-64870779	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv897710	chr11:64772545-64885445	Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
4	nsv897711	chr11:64772545-64900270	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
5	nsv897712	chr11:64856695-64882789	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64864200-64879400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:64864400-64874600	Weak transcription	Aorta	Aorta
3	chr11:64864400-64878000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:64864600-64869000	Weak transcription	Left Ventricle	heart
5	chr11:64864600-64873000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr11:64864600-64874600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:64864600-64876400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:64864800-64867400	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr11:64864800-64867800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr11:64864800-64868600	Weak transcription	Osteobl	bone
11	chr11:64864800-64869000	Weak transcription	Pancreas	Pancrea
12	chr11:64864800-64869200	Weak transcription	Right Atrium	heart
13	chr11:64864800-64869200	Weak transcription	Right Ventricle	heart
14	chr11:64864800-64869200	Weak transcription	NH-A	brain
15	chr11:64864800-64869600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr11:64864800-64869600	Weak transcription	HUVEC	blood vessel
17	chr11:64864800-64869800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:64864800-64870600	Weak transcription	HSMM	muscle
19	chr11:64864800-64875000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:64864800-64875000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:64864800-64875200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr11:64864800-64876000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:64864800-64876200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr11:64864800-64876400	Weak transcription	A549	lung
25	chr11:64864800-64878200	Weak transcription	NHDF-Ad	bronchial
26	chr11:64864800-64878600	Weak transcription	Small Intestine	intestine
27	chr11:64864800-64879400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr11:64865000-64867400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr11:64865000-64868200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:64865000-64868200	Weak transcription	Fetal Brain Female	brain
31	chr11:64865000-64868400	Weak transcription	Brain Substantia Nigra	brain
32	chr11:64865000-64868600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr11:64865000-64868600	Weak transcription	Stomach Mucosa	stomach
34	chr11:64865000-64868800	Weak transcription	Brain Anterior Caudate	brain
35	chr11:64865000-64868800	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr11:64865000-64869000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:64865000-64869200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr11:64865000-64869200	Weak transcription	Ovary	ovary
39	chr11:64865000-64869600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr11:64865000-64869600	Weak transcription	Esophagus	oesophagus
41	chr11:64865000-64869800	Weak transcription	Primary hematopoietic stem cells	blood
42	chr11:64865000-64869800	Weak transcription	NHEK	skin
43	chr11:64865000-64870600	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr11:64865000-64870600	Strong transcription	Fetal Stomach	stomach
45	chr11:64865000-64872800	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr11:64865000-64873200	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr11:64865000-64874400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr11:64865000-64874400	Weak transcription	Colonic Mucosa	Colon
49	chr11:64865000-64875200	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr11:64865000-64875600	Weak transcription	Colon Smooth Muscle	Colon

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