Variant report

Variant	rs35983251
Chromosome Location	chr11:64884599-64884600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:223)
CpG islands
(count:0)
Chromatin interactive
region (count:40)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:223 , 50 per page) page: 1 2 3 4 5

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr11:64884012-64885667	HepG2	liver:	n/a	chr11:64885269-64885278
2	UBTF	chr11:64884318-64885503	K562	blood:	n/a	n/a
3	POLR2A	chr11:64884555-64885580	HepG2	liver:	n/a	n/a
4	E2F6	chr11:64883750-64885555	H1-hESC	embryonic stem cell:	n/a	n/a
5	CHD1	chr11:64884547-64885140	H1-hESC	embryonic stem cell:	n/a	n/a
6	JUN	chr11:64884129-64885655	K562	blood:	n/a	chr11:64885359-64885372
7	POLR2A	chr11:64884048-64885688	HUVEC	blood vessel:	n/a	n/a
8	ELF1	chr11:64883998-64885513	GM12878	blood:	n/a	chr11:64885175-64885188 chr11:64885176-64885187 chr11:64885196-64885209 chr11:64885198-64885207 chr11:64885177-64885186 chr11:64885197-64885208
9	POLR2A	chr11:64884197-64885566	GM15510	blood:	n/a	n/a
10	ELF1	chr11:64884032-64885673	MCF-7	breast:	n/a	chr11:64885175-64885188 chr11:64885176-64885187 chr11:64885196-64885209 chr11:64885198-64885207 chr11:64885177-64885186 chr11:64885197-64885208
11	STAT5A	chr11:64884084-64885777	GM12878	blood:	n/a	chr11:64884981-64885005
12	FOXM1	chr11:64884554-64885706	GM12878	blood:	n/a	n/a
13	POLR2A	chr11:64884063-64885547	K562	blood:	n/a	n/a
14	SIN3AK20	chr11:64884226-64885522	SK-N-SH	brain:	n/a	n/a
15	POLR2A	chr11:64881621-64885776	GM12891	blood:	n/a	n/a
16	POU2F2	chr11:64884199-64885634	GM12891	blood:	n/a	n/a
17	POLR2A	chr11:64879949-64886482	MCF10A-Er-Src	breast:	n/a	n/a
18	POLR2A	chr11:64884208-64885660	GM12878	blood:	n/a	n/a
19	POLR2A	chr11:64884337-64884707	U87	brain:	n/a	n/a
20	TCF12	chr11:64883940-64885757	A549	lung:	n/a	n/a
21	PBX3	chr11:64884110-64885795	SK-N-SH	brain:	n/a	n/a
22	ZBTB33	chr11:64884425-64885645	SK-N-SH	brain:	n/a	n/a
23	YY1	chr11:64884549-64885565	SK-N-SH_RA	brain:	n/a	n/a
24	RELA	chr11:64884436-64885597	GM18951	blood:	n/a	n/a
25	POLR2A	chr11:64884511-64885655	NB4	blood:	n/a	n/a
26	CEBPD	chr11:64884301-64885608	HepG2	liver:	n/a	n/a
27	CBX3	chr11:64884079-64884626	K562	blood:	n/a	n/a
28	POLR2A	chr11:64881694-64890247	PFSK-1	brain:	n/a	n/a
29	YY1	chr11:64884515-64885594	GM12878	blood:	n/a	n/a
30	POLR2A	chr11:64878789-64886874	H1-hESC	embryonic stem cell:	n/a	n/a
31	MAX	chr11:64883888-64885627	K562	blood:	n/a	chr11:64885269-64885278
32	POLR2A	chr11:64883960-64885608	MCF-7	breast:	n/a	n/a
33	POLR2A	chr11:64881996-64885883	H1-hESC	embryonic stem cell:	n/a	n/a
34	POLR2A	chr11:64884117-64885549	HEK293	kidney:	n/a	n/a
35	POLR2A	chr11:64883876-64885549	A549	lung:	n/a	n/a
36	POLR2A	chr11:64883534-64886531	PANC-1	pancreas:	n/a	n/a
37	JUND	chr11:64884320-64885643	A549	lung:	n/a	n/a
38	POLR2A	chr11:64882063-64885673	IMR90	lung:	n/a	n/a
39	HCFC1	chr11:64882807-64885682	Hela-S3	cervix:	n/a	n/a
40	MXI1	chr11:64883672-64885798	SK-N-SH	brain:	n/a	n/a
41	PAX5	chr11:64884046-64885448	GM12892	blood:	n/a	n/a
42	POLR2A	chr11:64878686-64885755	GM12891	blood:	n/a	n/a
43	HDAC2	chr11:64884144-64885360	MCF-7	breast:	n/a	n/a
44	POLR2A	chr11:64882084-64885696	GM12878	blood:	n/a	n/a
45	HEY1	chr11:64884283-64885675	K562	blood:	n/a	chr11:64885212-64885227
46	USF2	chr11:64883556-64885660	Hela-S3	cervix:	n/a	chr11:64885212-64885228
47	BCL3	chr11:64884249-64885620	A549	lung:	n/a	chr11:64885197-64885206
48	POLR2A	chr11:64883381-64886247	Hela-S3	cervix:	n/a	n/a
49	POLR2A	chr11:64884221-64885591	GM18526	blood:	n/a	n/a
50	TAF1	chr11:64884214-64885472	ECC-1	luminal epithelium:	n/a	n/a

No data

(count:40 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64883300..64885236-chr11:64972448..64974242,2	K562	blood:
2	chr11:64536552..64539187-chr11:64882695..64885248,2	MCF-7	breast:
3	chr11:64787248..64789903-chr11:64884461..64886081,2	MCF-7	breast:
4	chr11:64779861..64784378-chr11:64881512..64885598,8	MCF-7	breast:
5	chr11:64544471..64546951-chr11:64883207..64885206,3	K562	blood:
6	chr11:64778393..64787449-chr11:64877655..64886980,25	K562	blood:
7	chr11:64569309..64573413-chr11:64882963..64885967,3	K562	blood:
8	chr11:64884104..64886722-chr11:65028926..65030544,2	MCF-7	breast:
9	chr11:64654425..64656235-chr11:64883004..64885352,2	K562	blood:
10	chr11:64568159..64573413-chr11:64882450..64885409,5	K562	blood:
11	chr11:64884264..64885235-chrX:47004398..47004945,2	Hela-S3	cervix:
12	chr11:64544278..64548048-chr11:64882517..64885401,5	K562	blood:
13	chr11:64609572..64613469-chr11:64883335..64886835,8	MCF-7	breast:
14	chr11:64553028..64555577-chr11:64882403..64884702,2	MCF-7	breast:
15	chr11:64862526..64865749-chr11:64882167..64886670,6	K562	blood:
16	chr11:64884402..64886500-chr12:56223721..56226196,2	MCF-7	breast:
17	chr11:64642261..64647543-chr11:64882719..64886329,5	MCF-7	breast:
18	chr11:64806922..64809393-chr11:64883452..64886674,3	MCF-7	breast:
19	chr11:64643589..64645871-chr11:64883152..64885290,3	K562	blood:
20	chr11:64880606..64886969-chr11:64935331..64942091,20	K562	blood:
21	chr11:64877702..64891058-chr11:64944203..64957091,32	K562	blood:
22	chr11:64643590..64647956-chr11:64883297..64887661,6	MCF-7	breast:
23	chr11:64875868..64888016-chr11:64945810..64953962,46	MCF-7	breast:
24	chr11:64610442..64614915-chr11:64882306..64888577,8	K562	blood:
25	chr11:64778507..64787901-chr11:64877920..64890097,31	K562	blood:
26	chr11:64772580..64786543-chr11:64875055..64887722,37	MCF-7	breast:
27	chr11:64878261..64886969-chr11:64935331..64941944,21	K562	blood:
28	chr11:64877522..64908330-chr11:64931619..64960265,171	MCF-7	breast:
29	chr11:62607346..62609197-chr11:64882535..64884835,2	MCF-7	breast:
30	chr11:64884386..64886553-chr6:30687642..30689654,2	MCF-7	breast:
31	chr11:64882968..64888833-chr11:64945101..64949501,11	K562	blood:
32	chr11:64883613..64891269-chr11:65027573..65033885,11	K562	blood:
33	chr11:64849686..64855071-chr11:64883547..64886732,9	MCF-7	breast:
34	chr11:64569285..64571691-chr11:64884123..64886254,2	MCF-7	breast:
35	chr11:64883520..64885092-chr15:69744413..69746307,2	MCF-7	breast:
36	chr11:64606648..64614730-chr11:64876453..64886748,20	MCF-7	breast:
37	chr11:64611161..64616461-chr11:64883590..64887057,5	K562	blood:
38	chr11:64884257..64886940-chr11:64972599..64976618,4	MCF-7	breast:
39	chr11:64883484..64885408-chr6:30582873..30584863,2	MCF-7	breast:
40	chr11:64883635..64887153-chr11:65027849..65031198,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000255173	TF binding region
ENSG00000014216	Chromatin interaction
ENSG00000137818	Chromatin interaction
ENSG00000249251	Chromatin interaction
ENSG00000182872	Chromatin interaction
ENSG00000273003	Chromatin interaction
ENSG00000014138	Chromatin interaction
ENSG00000255200	Chromatin interaction
ENSG00000110047	Chromatin interaction
ENSG00000269038	Chromatin interaction
ENSG00000135392	Chromatin interaction
ENSG00000213465	Chromatin interaction
ENSG00000171219	Chromatin interaction
ENSG00000168061	Chromatin interaction
ENSG00000168066	Chromatin interaction
ENSG00000204710	Chromatin interaction
ENSG00000196230	Chromatin interaction
ENSG00000182796	Chromatin interaction
ENSG00000162300	Chromatin interaction
ENSG00000147123	Chromatin interaction
ENSG00000254614	Chromatin interaction
ENSG00000146670	Chromatin interaction
ENSG00000222894	Chromatin interaction
ENSG00000168067	Chromatin interaction
ENSG00000149823	Chromatin interaction
ENSG00000269290	Chromatin interaction
ENSG00000133316	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12271615	0.87[AFR][1000 genomes]
rs12279247	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12280476	0.95[AFR][1000 genomes]
rs12282348	1.00[AMR][1000 genomes]
rs12285030	0.95[AFR][1000 genomes]
rs12288247	0.95[AFR][1000 genomes]
rs12291307	0.92[AFR][1000 genomes]
rs3782095	0.95[AFR][1000 genomes]
rs56368078	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57731342	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110646	0.97[AFR][1000 genomes]
rs7926131	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7935441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7936473	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897710	chr11:64772545-64885445	Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
3	nsv897711	chr11:64772545-64900270	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64882200-64886600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:64882800-64884600	Enhancers	Fetal Brain Male	brain
3	chr11:64883400-64884800	Enhancers	Fetal Heart	heart
4	chr11:64883400-64885600	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
5	chr11:64883600-64884600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:64883600-64884600	Flanking Active TSS	HMEC	breast
7	chr11:64883600-64885200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
8	chr11:64883800-64884600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
9	chr11:64883800-64884600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:64883800-64884600	Flanking Active TSS	Brain Angular Gyrus	brain
11	chr11:64883800-64884600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
12	chr11:64883800-64884600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
13	chr11:64883800-64885200	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr11:64883800-64885200	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr11:64883800-64885200	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
16	chr11:64883800-64885200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:64883800-64885200	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr11:64883800-64885200	Active TSS	Psoas Muscle	Psoas
19	chr11:64883800-64885400	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:64883800-64885600	Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr11:64884000-64884600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
22	chr11:64884000-64884600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:64884000-64884600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
24	chr11:64884000-64884600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr11:64884000-64884600	Flanking Active TSS	Brain Anterior Caudate	brain
26	chr11:64884000-64884600	Flanking Active TSS	Brain Cingulate Gyrus	brain
27	chr11:64884000-64884600	Flanking Active TSS	Brain Hippocampus Middle	brain
28	chr11:64884000-64884600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
29	chr11:64884000-64884600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr11:64884000-64884600	Flanking Active TSS	Fetal Brain Female	brain
31	chr11:64884000-64884600	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
32	chr11:64884000-64884600	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
33	chr11:64884000-64884600	Flanking Active TSS	Lung	lung
34	chr11:64884000-64884600	Flanking Active TSS	Pancreas	Pancrea
35	chr11:64884000-64884600	Flanking Active TSS	Rectal Smooth Muscle	rectum
36	chr11:64884000-64884600	Flanking Active TSS	Dnd41	blood
37	chr11:64884000-64884600	Flanking Active TSS	GM12878-XiMat	blood
38	chr11:64884000-64884600	Flanking Active TSS	Hela-S3	cervix
39	chr11:64884000-64884800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr11:64884000-64884800	Flanking Active TSS	Liver	Liver
41	chr11:64884000-64884800	Flanking Active TSS	Duodenum Mucosa	Duodenum
42	chr11:64884000-64884800	Flanking Active TSS	Spleen	Spleen
43	chr11:64884000-64885000	Transcr. at gene 5' and 3'	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr11:64884000-64885000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:64884000-64885000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
46	chr11:64884000-64885000	Flanking Active TSS	Adipose Nuclei	Adipose
47	chr11:64884000-64885000	Flanking Active TSS	Stomach Smooth Muscle	stomach
48	chr11:64884000-64885200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr11:64884000-64885200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr11:64884000-64885200	Flanking Active TSS	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links