Variant report

Variant	rs11234475
Chromosome Location	chr11:85630389-85630390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11234474	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234477	1.00[ASN][1000 genomes]
rs11828815	0.87[ASN][1000 genomes]
rs12270097	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274978	0.84[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12283964	1.00[ASN][1000 genomes]
rs12294042	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294060	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294296	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12807689	1.00[ASN][1000 genomes]
rs3741008	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824955	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4357715	0.87[ASN][1000 genomes]
rs61099803	0.87[ASN][1000 genomes]
rs7124041	1.00[ASN][1000 genomes]
rs7126571	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961111	0.87[ASN][1000 genomes]
rs7950710	0.87[ASN][1000 genomes]
rs9630223	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1048818	chr11:85524635-85746473	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv541116	chr11:85524635-85746473	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv898053	chr11:85579304-85634425	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1053808	chr11:85588919-85757693	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85629400-85630800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr11:85629600-85630800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr11:85629800-85630400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr11:85629800-85630400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:85629800-85630800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr11:85630000-85630400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr11:85630000-85630600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr11:85630000-85630600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:85630000-85630600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:85630000-85630800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:85630000-85630800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:85630000-85631000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:85630000-85631000	Enhancers	Osteobl	bone
14	chr11:85630200-85630600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:85630200-85630600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr11:85630200-85630600	Flanking Active TSS	HepG2	liver
17	chr11:85630200-85633400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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