Variant report

Variant	rs12283964
Chromosome Location	chr11:85645920-85645921
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11234474	1.00[ASN][1000 genomes]
rs11234475	1.00[ASN][1000 genomes]
rs11234477	1.00[ASN][1000 genomes]
rs11828815	0.87[ASN][1000 genomes]
rs12270097	1.00[ASN][1000 genomes]
rs12274978	1.00[ASN][1000 genomes]
rs12294042	1.00[ASN][1000 genomes]
rs12294060	1.00[ASN][1000 genomes]
rs12294296	1.00[ASN][1000 genomes]
rs12807689	1.00[ASN][1000 genomes]
rs3741008	1.00[ASN][1000 genomes]
rs3824955	1.00[ASN][1000 genomes]
rs4357715	0.87[ASN][1000 genomes]
rs61099803	0.87[ASN][1000 genomes]
rs7124041	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126571	1.00[ASN][1000 genomes]
rs72961111	0.87[ASN][1000 genomes]
rs7950710	0.87[ASN][1000 genomes]
rs9630223	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1048818	chr11:85524635-85746473	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv541116	chr11:85524635-85746473	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv1053808	chr11:85588919-85757693	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1053599	chr11:85641619-85684353	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv1040567	chr11:85641619-85684935	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85643000-85647000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:85643600-85649400	Weak transcription	HepG2	liver
3	chr11:85645600-85646000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:85645600-85646000	Bivalent/Poised TSS	Osteobl	bone
5	chr11:85645600-85646200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:85645600-85646200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:85645600-85646200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:85645800-85646000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:85645800-85646000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:85645800-85646000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:85645800-85646000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:85645800-85646000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:85645800-85646000	Flanking Active TSS	Adipose Nuclei	Adipose
14	chr11:85645800-85646000	Flanking Active TSS	Esophagus	oesophagus
15	chr11:85645800-85646000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
16	chr11:85645800-85646000	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
17	chr11:85645800-85646000	Flanking Bivalent TSS/Enh	Left Ventricle	heart
18	chr11:85645800-85646000	Flanking Active TSS	Right Atrium	heart
19	chr11:85645800-85646000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
20	chr11:85645800-85646000	Flanking Active TSS	Stomach Smooth Muscle	stomach
21	chr11:85645800-85646000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
22	chr11:85645800-85646000	Flanking Active TSS	NHDF-Ad	bronchial
23	chr11:85645800-85646200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:85645800-85646200	ZNF genes & repeats	Fetal Intestine Small	intestine
25	chr11:85645800-85646200	Bivalent Enhancer	Right Ventricle	heart
26	chr11:85645800-85646400	Enhancers	Ovary	ovary
27	chr11:85645800-85646600	ZNF genes & repeats	Pancreas	Pancrea
28	chr11:85645800-85647200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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