Variant report
| Variant | rs3824955 |
|---|---|
| Chromosome Location | chr11:85629262-85629263 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:85627451..85630538-chr11:85632565..85635879,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000255005 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11234474 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11234475 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11234477 | 1.00[ASN][1000 genomes] |
| rs11828815 | 0.87[ASN][1000 genomes] |
| rs12270097 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12274978 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12283964 | 1.00[ASN][1000 genomes] |
| rs12294042 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12294060 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12294296 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12807689 | 1.00[ASN][1000 genomes] |
| rs3741008 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4357715 | 0.87[ASN][1000 genomes] |
| rs61099803 | 0.87[ASN][1000 genomes] |
| rs7124041 | 1.00[ASN][1000 genomes] |
| rs7126571 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72961111 | 0.87[ASN][1000 genomes] |
| rs7950710 | 0.87[ASN][1000 genomes] |
| rs9630223 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1051155 | chr11:85006564-85721261 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 64 gene(s) | inside rSNPs | diseases |
| 2 | nsv541110 | chr11:85006564-85721261 | Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 64 gene(s) | inside rSNPs | diseases |
| 3 | nsv1035489 | chr11:85502953-85778229 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| 4 | nsv1048818 | chr11:85524635-85746473 | Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 5 | nsv541116 | chr11:85524635-85746473 | Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 6 | nsv898053 | chr11:85579304-85634425 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 7 | nsv1053808 | chr11:85588919-85757693 | Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:85615800-85630200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr11:85629200-85630200 | Enhancers | HUES48 Cell Line | embryonic stem cell |
| 3 | chr11:85629200-85630200 | Enhancers | HepG2 | liver |
