Variant report

Variant	rs11234585
Chromosome Location	chr11:85942824-85942825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85939907..85943169-chr11:85949863..85954103,4	K562	blood:
2	chr11:85445751..85448371-chr11:85941133..85943891,2	MCF-7	breast:
3	chr11:85941376..85943458-chr11:85954441..85957343,3	MCF-7	breast:
4	chr11:85940546..85944028-chr11:85951263..85955917,6	K562	blood:

Variant related genes	Relation type
ENSG00000074266	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10792840	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10898450	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10898454	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10898455	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10898456	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11234577	0.86[AMR][1000 genomes]
rs11234578	0.86[AMR][1000 genomes]
rs11234582	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11234583	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11234586	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11234587	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11234591	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11234592	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11234595	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1215001	0.86[ASN][1000 genomes]
rs12225782	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12226796	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12282663	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12574118	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12577739	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12800606	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1376947	0.87[ASN][1000 genomes]
rs1391221	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs19039	0.86[ASN][1000 genomes]
rs291225	0.82[ASN][1000 genomes]
rs291227	0.86[ASN][1000 genomes]
rs291228	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs291230	0.86[ASN][1000 genomes]
rs291233	0.86[ASN][1000 genomes]
rs291234	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs291237	0.85[ASN][1000 genomes]
rs291238	0.85[ASN][1000 genomes]
rs291242	0.81[ASN][1000 genomes]
rs291251	0.87[ASN][1000 genomes]
rs34095340	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34972740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3923738	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4547120	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4944562	0.85[EUR][1000 genomes]
rs57902302	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61178383	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11234585	EED	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85941000-85943600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:85941600-85945800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:85941600-85955000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:85942400-85943000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:85942400-85946200	Weak transcription	K562	blood
6	chr11:85942800-85943000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links