Variant report

Variant	rs34972740
Chromosome Location	chr11:85939100-85939101
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85924125..85925706-chr11:85937519..85939246,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10792840	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10898450	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10898454	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10898455	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10898456	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11234577	0.86[AMR][1000 genomes]
rs11234578	0.86[AMR][1000 genomes]
rs11234582	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11234583	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11234585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234586	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11234587	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11234591	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11234592	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11234595	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1215001	0.86[ASN][1000 genomes]
rs12225782	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12226796	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12282663	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12574118	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12577739	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12800606	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1376947	0.87[ASN][1000 genomes]
rs1391221	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs19039	0.86[ASN][1000 genomes]
rs291225	0.82[ASN][1000 genomes]
rs291227	0.86[ASN][1000 genomes]
rs291228	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs291230	0.86[ASN][1000 genomes]
rs291233	0.86[ASN][1000 genomes]
rs291234	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs291237	0.85[ASN][1000 genomes]
rs291238	0.85[ASN][1000 genomes]
rs291242	0.81[ASN][1000 genomes]
rs291251	0.87[ASN][1000 genomes]
rs34095340	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3923738	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4547120	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4944562	0.85[EUR][1000 genomes]
rs57902302	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61178383	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34972740	EED	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85930000-85939800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:85934800-85939800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:85937600-85941200	Weak transcription	Brain Anterior Caudate	brain
4	chr11:85938000-85939200	Enhancers	HepG2	liver
5	chr11:85938400-85941400	Weak transcription	Placenta	Placenta

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