Variant report

Variant	rs11234583
Chromosome Location	chr11:85933536-85933537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85932773..85934809-chr11:85954444..85956981,3	K562	blood:
2	chr11:85929599..85931217-chr11:85931232..85933542,2	MCF-7	breast:
3	chr11:85932737..85934846-chr11:85954067..85957366,3	K562	blood:

Variant related genes	Relation type
ENSG00000074266	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10792840	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10898445	0.84[CEU][hapmap]
rs10898450	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10898454	0.92[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10898455	0.84[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10898456	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11234582	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11234585	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11234586	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11234587	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11234591	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11234592	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11234595	0.88[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1215001	1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12225782	0.92[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12226796	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12282663	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12574118	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12577739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12800606	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1376947	0.92[CHB][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1391221	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs19039	1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2173281	0.84[CEU][hapmap]
rs2847470	0.93[CHB][hapmap]
rs291215	0.92[CHB][hapmap]
rs291216	0.93[CHB][hapmap]
rs291220	0.93[CHB][hapmap]
rs291221	0.93[CHB][hapmap]
rs291225	0.81[ASN][1000 genomes]
rs291227	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs291228	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs291230	1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs291233	1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs291234	1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs291235	0.81[EUR][1000 genomes]
rs291237	0.80[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs291238	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs291242	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs291251	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34095340	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34972740	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3923738	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4547120	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4944562	0.92[EUR][1000 genomes]
rs57902302	0.85[ASN][1000 genomes]
rs61178383	0.82[ASN][1000 genomes]
rs7106569	0.93[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11234583	EED	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85930000-85937600	Weak transcription	Ovary	ovary
2	chr11:85930000-85939800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:85932800-85933800	Enhancers	HSMMtube	muscle
4	chr11:85932800-85934800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:85933000-85933600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:85933000-85933800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr11:85933400-85934800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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