Variant report

Variant	rs7106569
Chromosome Location	chr11:86052076-86052077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10751138	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10792852	0.92[ASN][1000 genomes]
rs10898450	0.84[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap]
rs10898454	0.80[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap]
rs10898455	0.80[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap]
rs11234583	0.93[CHB][hapmap]
rs11234595	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs11234619	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11234621	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234623	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11234625	0.92[ASN][1000 genomes]
rs11825046	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1215001	0.91[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs12225782	0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs12577739	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs1376947	0.91[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs1391221	0.80[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.94[YRI][hapmap]
rs19039	0.96[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs2600950	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2646732	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2847470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs291196	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs291203	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs291211	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs291215	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs291216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs291220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs291221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs291222	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs291225	0.80[AMR][1000 genomes]
rs291227	0.80[ASN][1000 genomes]
rs291228	0.91[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs291230	0.87[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs291231	0.91[CEU][hapmap]
rs291233	0.96[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs291234	0.96[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs291235	0.84[CEU][hapmap]
rs291236	0.83[CEU][hapmap]
rs291237	0.92[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs291238	0.81[ASN][1000 genomes]
rs291242	0.96[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs291247	0.83[ASN][1000 genomes]
rs291251	0.93[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes]
rs35254887	0.95[EUR][1000 genomes]
rs4944567	0.86[ASN][1000 genomes]
rs4944569	0.92[ASN][1000 genomes]
rs6592286	0.89[ASN][1000 genomes]
rs6592287	0.91[ASN][1000 genomes]
rs7117195	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7124620	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7480354	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937189	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7937597	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948056	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949770	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7106569	EED	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86014200-86055400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:86014200-86057400	Weak transcription	Aorta	Aorta
3	chr11:86014400-86066600	Weak transcription	HSMMtube	muscle
4	chr11:86014600-86066400	Weak transcription	Fetal Kidney	kidney
5	chr11:86014800-86058600	Weak transcription	NHLF	lung
6	chr11:86015000-86061000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr11:86015400-86059600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr11:86020400-86057200	Weak transcription	Small Intestine	intestine
9	chr11:86022000-86061000	Weak transcription	Esophagus	oesophagus
10	chr11:86023800-86061200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:86024200-86052200	Weak transcription	Colonic Mucosa	Colon
12	chr11:86024600-86057400	Weak transcription	Pancreas	Pancrea
13	chr11:86025000-86061600	Weak transcription	Psoas Muscle	Psoas
14	chr11:86025200-86057800	Weak transcription	HepG2	liver
15	chr11:86028400-86059200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr11:86032600-86057600	Weak transcription	Brain Hippocampus Middle	brain
17	chr11:86033400-86066400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:86033600-86057000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr11:86035400-86066600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:86035600-86058800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr11:86038000-86059800	Weak transcription	NH-A	brain
22	chr11:86040800-86060800	Weak transcription	Brain Angular Gyrus	brain
23	chr11:86042000-86057600	Weak transcription	NHDF-Ad	bronchial
24	chr11:86042200-86052800	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr11:86047600-86057400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:86047600-86059400	Weak transcription	NHEK	skin
27	chr11:86047800-86067800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr11:86048400-86070200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:86048800-86057400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:86049400-86057600	Weak transcription	Primary hematopoietic stem cells	blood
31	chr11:86049400-86067800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr11:86049600-86056000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:86049600-86057400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr11:86049600-86057400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr11:86049600-86057400	Weak transcription	Gastric	stomach
36	chr11:86049600-86057400	Weak transcription	Lung	lung
37	chr11:86049600-86057400	Weak transcription	Thymus	Thymus
38	chr11:86049600-86057400	Weak transcription	Spleen	Spleen
39	chr11:86049600-86059000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr11:86049600-86059200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr11:86049600-86059400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr11:86049600-86060800	Weak transcription	A549	lung
43	chr11:86049600-86062600	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr11:86049600-86065200	Weak transcription	Fetal Brain Female	brain
45	chr11:86049600-86066400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr11:86049600-86066800	Weak transcription	HUVEC	blood vessel
47	chr11:86049600-86067600	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr11:86049800-86053400	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr11:86049800-86055000	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr11:86049800-86055400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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