Variant report

Variant	rs11234625
Chromosome Location	chr11:86068949-86068950
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10751138	0.90[ASN][1000 genomes]
rs10792852	1.00[ASN][1000 genomes]
rs11234619	0.81[ASN][1000 genomes]
rs11234621	0.92[ASN][1000 genomes]
rs11234623	1.00[ASN][1000 genomes]
rs11825046	0.92[ASN][1000 genomes]
rs12272468	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2600950	0.87[ASN][1000 genomes]
rs2646732	0.90[ASN][1000 genomes]
rs2847470	0.87[ASN][1000 genomes]
rs291203	0.86[ASN][1000 genomes]
rs291215	0.87[ASN][1000 genomes]
rs291216	0.88[ASN][1000 genomes]
rs291220	0.87[ASN][1000 genomes]
rs291221	0.88[ASN][1000 genomes]
rs292092	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs292093	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs292099	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs292104	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4944567	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4944568	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4944569	1.00[ASN][1000 genomes]
rs6592286	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6592287	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7106569	0.92[ASN][1000 genomes]
rs7109327	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7109568	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7117195	0.87[ASN][1000 genomes]
rs7124620	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7480354	0.92[ASN][1000 genomes]
rs7937597	0.92[ASN][1000 genomes]
rs7948056	0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11234625	EED	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86048400-86070200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:86050000-86072000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:86058200-86071200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:86058600-86069800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:86058600-86070000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:86066800-86070000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:86067000-86074600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:86067000-86081200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:86067200-86070800	Weak transcription	HUVEC	blood vessel
10	chr11:86067600-86069200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr11:86067600-86069200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr11:86067800-86069400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr11:86068400-86069800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:86068400-86072200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:86068600-86069000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:86068600-86069400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:86068600-86072000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:86068600-86072000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr11:86068800-86069200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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