Variant report

Variant	rs11825046
Chromosome Location	chr11:86061661-86061662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10751138	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10792852	0.92[ASN][1000 genomes]
rs10898450	0.84[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap]
rs10898454	0.80[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap]
rs10898455	0.80[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap]
rs11234583	0.93[CHB][hapmap]
rs11234595	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs11234619	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11234621	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234623	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11234625	0.92[ASN][1000 genomes]
rs1215001	0.91[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs12225782	0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs12577739	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs1376947	0.91[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs1391221	0.80[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.94[YRI][hapmap]
rs19039	0.96[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs2600950	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2646732	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2847470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs291196	0.89[EUR][1000 genomes]
rs291203	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs291211	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs291215	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs291216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs291220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs291221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs291222	0.87[EUR][1000 genomes]
rs291227	0.80[ASN][1000 genomes]
rs291228	0.91[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs291230	0.87[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs291231	0.91[CEU][hapmap]
rs291233	0.96[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs291234	0.96[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs291235	0.84[CEU][hapmap]
rs291236	0.83[CEU][hapmap]
rs291237	0.92[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs291238	0.81[ASN][1000 genomes]
rs291242	0.96[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs291247	0.83[ASN][1000 genomes]
rs291251	0.93[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs35254887	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4944567	0.86[ASN][1000 genomes]
rs4944569	0.92[ASN][1000 genomes]
rs6592286	0.89[ASN][1000 genomes]
rs6592287	0.91[ASN][1000 genomes]
rs7106569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117195	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7124620	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7480354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937189	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7937597	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949770	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11825046	EED	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86014400-86066600	Weak transcription	HSMMtube	muscle
2	chr11:86014600-86066400	Weak transcription	Fetal Kidney	kidney
3	chr11:86033400-86066400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:86035400-86066600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:86047800-86067800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:86048400-86070200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:86049400-86067800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr11:86049600-86062600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr11:86049600-86065200	Weak transcription	Fetal Brain Female	brain
10	chr11:86049600-86066400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:86049600-86066800	Weak transcription	HUVEC	blood vessel
12	chr11:86049600-86067600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr11:86049800-86061800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:86049800-86062600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr11:86049800-86068000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr11:86050000-86072000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:86050600-86063200	Weak transcription	Brain Germinal Matrix	brain
18	chr11:86050600-86068200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr11:86058000-86063600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:86058000-86063600	Weak transcription	Fetal Stomach	stomach
21	chr11:86058000-86067600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:86058200-86062400	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr11:86058200-86062600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr11:86058200-86062600	Weak transcription	Fetal Muscle Leg	muscle
25	chr11:86058200-86071200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:86058400-86067600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr11:86058600-86063400	Weak transcription	Primary T cells from cord blood	blood
28	chr11:86058600-86069800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:86058600-86070000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:86059400-86061800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr11:86059800-86066400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:86061000-86066800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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