Variant report

Variant	rs7937189
Chromosome Location	chr11:86063325-86063326
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10751138	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10792847	0.89[ASW][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.90[MKK][hapmap];0.83[TSI][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10898445	0.83[CHB][hapmap];0.82[CHD][hapmap]
rs10898470	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11234619	0.88[EUR][1000 genomes]
rs11234620	0.90[ASN][1000 genomes]
rs11234621	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11234623	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11825046	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1215001	0.87[CEU][hapmap];0.86[GIH][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap]
rs12225782	0.90[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs1376944	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1376947	0.87[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap]
rs167086	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs172364	0.92[ASN][1000 genomes]
rs19039	0.91[CEU][hapmap];0.86[GIH][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap]
rs2444025	0.94[ASN][1000 genomes]
rs2513200	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2600950	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2600951	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.90[MKK][hapmap];0.83[TSI][hapmap];0.89[YRI][hapmap];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2646727	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.90[MKK][hapmap];0.83[TSI][hapmap];0.89[YRI][hapmap];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2646728	0.91[ASN][1000 genomes]
rs2646729	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2646732	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2847470	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2847471	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.90[MKK][hapmap];0.83[TSI][hapmap];0.89[YRI][hapmap];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs291196	0.87[EUR][1000 genomes]
rs291197	0.92[ASN][1000 genomes]
rs291201	0.92[ASN][1000 genomes]
rs291202	0.91[ASN][1000 genomes]
rs291203	0.93[EUR][1000 genomes]
rs291204	0.92[ASN][1000 genomes]
rs291205	0.92[ASN][1000 genomes]
rs291211	0.90[EUR][1000 genomes]
rs291212	0.88[ASN][1000 genomes]
rs291213	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap];0.94[ASN][1000 genomes]
rs291215	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs291216	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs291218	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs291220	0.95[CEU][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs291221	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs291222	0.85[EUR][1000 genomes]
rs291223	0.92[ASN][1000 genomes]
rs291228	0.87[CEU][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap]
rs291230	0.83[CEU][hapmap];0.86[GIH][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap]
rs291231	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap]
rs291233	0.91[CEU][hapmap]
rs291234	0.91[CEU][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap]
rs291235	0.87[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs291236	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.98[TSI][hapmap]
rs291237	0.87[CEU][hapmap]
rs291239	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap]
rs291242	0.91[CEU][hapmap]
rs291244	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap]
rs291251	0.86[CEU][hapmap]
rs291252	0.82[TSI][hapmap]
rs35254887	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4424696	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4944565	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6592283	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7103304	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7106569	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7114282	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7114791	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7117195	0.85[EUR][1000 genomes]
rs7118102	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7122551	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7122914	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7124620	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7480354	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7937597	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7948056	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7949770	0.81[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7937189	EED	Cis_1M	lymphoblastoid	RTeQTL
rs7937189	EED	cis	parietal	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86014400-86066600	Weak transcription	HSMMtube	muscle
2	chr11:86014600-86066400	Weak transcription	Fetal Kidney	kidney
3	chr11:86033400-86066400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:86035400-86066600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:86047800-86067800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:86048400-86070200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:86049400-86067800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr11:86049600-86065200	Weak transcription	Fetal Brain Female	brain
9	chr11:86049600-86066400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:86049600-86066800	Weak transcription	HUVEC	blood vessel
11	chr11:86049600-86067600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:86049800-86068000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr11:86050000-86072000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:86050600-86068200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:86058000-86063600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:86058000-86063600	Weak transcription	Fetal Stomach	stomach
17	chr11:86058000-86067600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:86058200-86071200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:86058400-86067600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr11:86058600-86063400	Weak transcription	Primary T cells from cord blood	blood
21	chr11:86058600-86069800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:86058600-86070000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:86059800-86066400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:86061000-86066800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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