Variant report

Variant	rs7114282
Chromosome Location	chr11:86045681-86045682
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10792846	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10792847	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10898470	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11234620	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1376944	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs167087	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs172364	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2266155	0.80[AFR][1000 genomes]
rs2444025	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2509619	0.81[AFR][1000 genomes]
rs2513200	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2600951	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2646727	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2646728	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2646729	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2847471	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs291197	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs291201	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs291202	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs291204	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs291205	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs291208	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs291209	0.83[EUR][1000 genomes]
rs291212	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs291213	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs291218	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs291223	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs291244	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs3016798	0.82[EUR][1000 genomes]
rs35254887	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4424696	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4944565	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592283	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7103304	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7114791	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937189	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7938827	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508643	chr11:85988577-86047719	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7114282	EED	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86014200-86052000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:86014200-86055400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:86014200-86057400	Weak transcription	Aorta	Aorta
4	chr11:86014400-86066600	Weak transcription	HSMMtube	muscle
5	chr11:86014600-86045800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:86014600-86045800	Weak transcription	Right Ventricle	heart
7	chr11:86014600-86048400	Weak transcription	Brain Germinal Matrix	brain
8	chr11:86014600-86048800	Weak transcription	Thymus	Thymus
9	chr11:86014600-86049000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:86014600-86049800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:86014600-86066400	Weak transcription	Fetal Kidney	kidney
12	chr11:86014800-86045800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:86014800-86049000	Weak transcription	Hela-S3	cervix
14	chr11:86014800-86049200	Weak transcription	HUVEC	blood vessel
15	chr11:86014800-86058600	Weak transcription	NHLF	lung
16	chr11:86015000-86046000	Weak transcription	NHEK	skin
17	chr11:86015000-86061000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr11:86015200-86045800	Weak transcription	Osteobl	bone
19	chr11:86015200-86051400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:86015400-86045800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr11:86015400-86048400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr11:86015400-86049000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr11:86015400-86059600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr11:86015600-86048600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr11:86020400-86057200	Weak transcription	Small Intestine	intestine
26	chr11:86022000-86048800	Weak transcription	Gastric	stomach
27	chr11:86022000-86061000	Weak transcription	Esophagus	oesophagus
28	chr11:86023800-86061200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr11:86024200-86052200	Weak transcription	Colonic Mucosa	Colon
30	chr11:86024600-86057400	Weak transcription	Pancreas	Pancrea
31	chr11:86025000-86061600	Weak transcription	Psoas Muscle	Psoas
32	chr11:86025200-86057800	Weak transcription	HepG2	liver
33	chr11:86026000-86046000	Weak transcription	HMEC	breast
34	chr11:86026000-86049000	Weak transcription	K562	blood
35	chr11:86028400-86048800	Weak transcription	Spleen	Spleen
36	chr11:86028400-86059200	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr11:86029600-86050800	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr11:86030600-86049000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr11:86030800-86049200	Weak transcription	Fetal Brain Female	brain
40	chr11:86031800-86048400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr11:86032400-86045800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr11:86032600-86045800	Weak transcription	A549	lung
43	chr11:86032600-86057600	Weak transcription	Brain Hippocampus Middle	brain
44	chr11:86033000-86045800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr11:86033000-86046000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:86033200-86045800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr11:86033200-86045800	Weak transcription	Ovary	ovary
48	chr11:86033200-86045800	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr11:86033400-86066400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr11:86033600-86057000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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