Variant report

Variant	rs3016798
Chromosome Location	chr11:86028055-86028056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86026992..86029867-chr11:86040258..86043035,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10792847	0.82[EUR][1000 genomes]
rs10898470	0.82[EUR][1000 genomes]
rs11234620	0.81[EUR][1000 genomes]
rs1376944	0.83[EUR][1000 genomes]
rs172364	0.85[EUR][1000 genomes]
rs2266155	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2444025	0.81[AMR][1000 genomes]
rs2509619	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2513200	0.83[EUR][1000 genomes]
rs2600951	0.83[EUR][1000 genomes]
rs2646727	0.83[EUR][1000 genomes]
rs2646728	0.83[EUR][1000 genomes]
rs2646729	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2847471	0.83[EUR][1000 genomes]
rs291197	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs291201	0.85[EUR][1000 genomes]
rs291202	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs291204	0.85[EUR][1000 genomes]
rs291205	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs291207	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs291208	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs291209	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs291212	0.82[EUR][1000 genomes]
rs291213	0.85[EUR][1000 genomes]
rs291218	0.83[EUR][1000 genomes]
rs4424696	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4944565	0.82[EUR][1000 genomes]
rs6592283	0.82[EUR][1000 genomes]
rs7103304	0.82[EUR][1000 genomes]
rs7114282	0.82[EUR][1000 genomes]
rs7114791	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7118102	0.82[EUR][1000 genomes]
rs7122551	0.82[EUR][1000 genomes]
rs7122914	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508643	chr11:85988577-86047719	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3016798	EED	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86014000-86030000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:86014000-86030000	Weak transcription	Lung	lung
3	chr11:86014200-86030000	Weak transcription	Left Ventricle	heart
4	chr11:86014200-86031600	Weak transcription	Ovary	ovary
5	chr11:86014200-86052000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:86014200-86055400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:86014200-86057400	Weak transcription	Aorta	Aorta
8	chr11:86014400-86030000	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:86014400-86034400	Weak transcription	HSMM	muscle
10	chr11:86014400-86066600	Weak transcription	HSMMtube	muscle
11	chr11:86014600-86029800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:86014600-86029800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:86014600-86030000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr11:86014600-86030000	Weak transcription	Fetal Brain Female	brain
15	chr11:86014600-86030000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr11:86014600-86031600	Weak transcription	Fetal Lung	lung
17	chr11:86014600-86031600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr11:86014600-86035200	Weak transcription	NH-A	brain
19	chr11:86014600-86045600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr11:86014600-86045800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:86014600-86045800	Weak transcription	Right Ventricle	heart
22	chr11:86014600-86048400	Weak transcription	Brain Germinal Matrix	brain
23	chr11:86014600-86048800	Weak transcription	Thymus	Thymus
24	chr11:86014600-86049000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr11:86014600-86049800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:86014600-86066400	Weak transcription	Fetal Kidney	kidney
27	chr11:86014800-86030000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:86014800-86030400	Weak transcription	A549	lung
29	chr11:86014800-86031600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr11:86014800-86035800	Weak transcription	Brain Anterior Caudate	brain
31	chr11:86014800-86036000	Weak transcription	Brain Substantia Nigra	brain
32	chr11:86014800-86040600	Weak transcription	Brain Angular Gyrus	brain
33	chr11:86014800-86045800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr11:86014800-86049000	Weak transcription	Hela-S3	cervix
35	chr11:86014800-86049200	Weak transcription	HUVEC	blood vessel
36	chr11:86014800-86058600	Weak transcription	NHLF	lung
37	chr11:86015000-86036000	Weak transcription	Colon Smooth Muscle	Colon
38	chr11:86015000-86046000	Weak transcription	NHEK	skin
39	chr11:86015000-86061000	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr11:86015200-86029600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:86015200-86031200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:86015200-86033000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr11:86015200-86045800	Weak transcription	Osteobl	bone
44	chr11:86015200-86051400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr11:86015400-86030400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr11:86015400-86036200	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr11:86015400-86045800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr11:86015400-86048400	Weak transcription	Brain Cingulate Gyrus	brain
49	chr11:86015400-86049000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr11:86015400-86059600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links