Variant report

Variant	rs7103304
Chromosome Location	chr11:86051906-86051907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10792846	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10792847	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898470	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11234620	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1376944	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs167087	0.83[AFR][1000 genomes]
rs172364	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2444025	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2513200	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2600951	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2646727	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2646728	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2646729	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2847471	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs291197	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs291201	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs291202	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs291204	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs291205	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs291208	0.82[EUR][1000 genomes]
rs291209	0.83[EUR][1000 genomes]
rs291212	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs291213	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs291218	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs291223	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs291244	0.83[AFR][1000 genomes]
rs3016798	0.82[EUR][1000 genomes]
rs35254887	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4424696	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4944565	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592283	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7114282	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7114791	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7118102	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7122551	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7122914	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7937189	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7938827	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7103304	EED	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86014200-86052000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:86014200-86055400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:86014200-86057400	Weak transcription	Aorta	Aorta
4	chr11:86014400-86066600	Weak transcription	HSMMtube	muscle
5	chr11:86014600-86066400	Weak transcription	Fetal Kidney	kidney
6	chr11:86014800-86058600	Weak transcription	NHLF	lung
7	chr11:86015000-86061000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr11:86015400-86059600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr11:86020400-86057200	Weak transcription	Small Intestine	intestine
10	chr11:86022000-86061000	Weak transcription	Esophagus	oesophagus
11	chr11:86023800-86061200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:86024200-86052200	Weak transcription	Colonic Mucosa	Colon
13	chr11:86024600-86057400	Weak transcription	Pancreas	Pancrea
14	chr11:86025000-86061600	Weak transcription	Psoas Muscle	Psoas
15	chr11:86025200-86057800	Weak transcription	HepG2	liver
16	chr11:86028400-86059200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr11:86032600-86057600	Weak transcription	Brain Hippocampus Middle	brain
18	chr11:86033400-86066400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:86033600-86057000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr11:86035400-86066600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:86035600-86058800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr11:86038000-86059800	Weak transcription	NH-A	brain
23	chr11:86040800-86060800	Weak transcription	Brain Angular Gyrus	brain
24	chr11:86042000-86057600	Weak transcription	NHDF-Ad	bronchial
25	chr11:86042200-86052800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr11:86047600-86057400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:86047600-86059400	Weak transcription	NHEK	skin
28	chr11:86047800-86067800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr11:86048400-86070200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:86048800-86057400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:86049400-86057600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr11:86049400-86067800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr11:86049600-86056000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:86049600-86057400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:86049600-86057400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr11:86049600-86057400	Weak transcription	Gastric	stomach
37	chr11:86049600-86057400	Weak transcription	Lung	lung
38	chr11:86049600-86057400	Weak transcription	Thymus	Thymus
39	chr11:86049600-86057400	Weak transcription	Spleen	Spleen
40	chr11:86049600-86059000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr11:86049600-86059200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr11:86049600-86059400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr11:86049600-86060800	Weak transcription	A549	lung
44	chr11:86049600-86062600	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr11:86049600-86065200	Weak transcription	Fetal Brain Female	brain
46	chr11:86049600-86066400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr11:86049600-86066800	Weak transcription	HUVEC	blood vessel
48	chr11:86049600-86067600	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr11:86049800-86053400	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr11:86049800-86055000	Weak transcription	Rectal Mucosa Donor 31	rectum

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