Variant report

Variant	rs172364
Chromosome Location	chr11:86025281-86025282
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10792847	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10898470	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11234620	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1376944	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs167087	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2266155	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2444025	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2509619	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2513200	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2600951	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2646727	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2646728	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2646729	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2847471	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs291197	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291202	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs291204	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291205	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291207	0.81[AFR][1000 genomes]
rs291208	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs291209	0.86[EUR][1000 genomes]
rs291212	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs291213	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs291218	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs291223	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs291244	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3016798	0.85[EUR][1000 genomes]
rs35254887	0.92[ASN][1000 genomes]
rs4424696	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4944565	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6592283	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7103304	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7114282	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7114791	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7118102	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7122551	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7122914	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7937189	0.92[ASN][1000 genomes]
rs7938827	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508643	chr11:85988577-86047719	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs172364	EED	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86014000-86026000	Weak transcription	Placenta	Placenta
2	chr11:86014000-86030000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:86014000-86030000	Weak transcription	Lung	lung
4	chr11:86014200-86028000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:86014200-86030000	Weak transcription	Left Ventricle	heart
6	chr11:86014200-86031600	Weak transcription	Ovary	ovary
7	chr11:86014200-86052000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:86014200-86055400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:86014200-86057400	Weak transcription	Aorta	Aorta
10	chr11:86014400-86027800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:86014400-86030000	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr11:86014400-86034400	Weak transcription	HSMM	muscle
13	chr11:86014400-86066600	Weak transcription	HSMMtube	muscle
14	chr11:86014600-86026600	Weak transcription	Fetal Brain Male	brain
15	chr11:86014600-86026600	Weak transcription	Fetal Intestine Large	intestine
16	chr11:86014600-86026800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr11:86014600-86029800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:86014600-86029800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr11:86014600-86030000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr11:86014600-86030000	Weak transcription	Fetal Brain Female	brain
21	chr11:86014600-86030000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr11:86014600-86031600	Weak transcription	Fetal Lung	lung
23	chr11:86014600-86031600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr11:86014600-86035200	Weak transcription	NH-A	brain
25	chr11:86014600-86045600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr11:86014600-86045800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr11:86014600-86045800	Weak transcription	Right Ventricle	heart
28	chr11:86014600-86048400	Weak transcription	Brain Germinal Matrix	brain
29	chr11:86014600-86048800	Weak transcription	Thymus	Thymus
30	chr11:86014600-86049000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr11:86014600-86049800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr11:86014600-86066400	Weak transcription	Fetal Kidney	kidney
33	chr11:86014800-86026800	Weak transcription	NHDF-Ad	bronchial
34	chr11:86014800-86030000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr11:86014800-86030400	Weak transcription	A549	lung
36	chr11:86014800-86031600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr11:86014800-86035800	Weak transcription	Brain Anterior Caudate	brain
38	chr11:86014800-86036000	Weak transcription	Brain Substantia Nigra	brain
39	chr11:86014800-86040600	Weak transcription	Brain Angular Gyrus	brain
40	chr11:86014800-86045800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr11:86014800-86049000	Weak transcription	Hela-S3	cervix
42	chr11:86014800-86049200	Weak transcription	HUVEC	blood vessel
43	chr11:86014800-86058600	Weak transcription	NHLF	lung
44	chr11:86015000-86036000	Weak transcription	Colon Smooth Muscle	Colon
45	chr11:86015000-86046000	Weak transcription	NHEK	skin
46	chr11:86015000-86061000	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr11:86015200-86029600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr11:86015200-86031200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:86015200-86033000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr11:86015200-86045800	Weak transcription	Osteobl	bone

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