Variant report

Variant	rs2509619
Chromosome Location	chr11:86022900-86022901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11234620	0.81[AFR][1000 genomes]
rs1376944	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs172364	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2266155	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2513200	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2600951	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2646727	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2646728	0.81[EUR][1000 genomes]
rs2646729	0.81[EUR][1000 genomes]
rs2847471	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs291197	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs291201	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs291202	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs291204	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs291205	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs291207	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs291208	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs291209	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs291212	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs291213	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs291218	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs291223	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3016798	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7114282	0.81[AFR][1000 genomes]
rs7118102	0.81[AFR][1000 genomes]
rs7122551	0.81[AFR][1000 genomes]
rs7122914	0.81[AFR][1000 genomes]
rs7938827	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508643	chr11:85988577-86047719	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2509619	EED	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86014000-86026000	Weak transcription	Placenta	Placenta
2	chr11:86014000-86030000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:86014000-86030000	Weak transcription	Lung	lung
4	chr11:86014200-86024600	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr11:86014200-86024600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:86014200-86024800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:86014200-86028000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:86014200-86030000	Weak transcription	Left Ventricle	heart
9	chr11:86014200-86031600	Weak transcription	Ovary	ovary
10	chr11:86014200-86052000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:86014200-86055400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr11:86014200-86057400	Weak transcription	Aorta	Aorta
13	chr11:86014400-86024000	Weak transcription	Fetal Thymus	thymus
14	chr11:86014400-86024400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr11:86014400-86024600	Weak transcription	Fetal Muscle Leg	muscle
16	chr11:86014400-86027800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:86014400-86030000	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr11:86014400-86034400	Weak transcription	HSMM	muscle
19	chr11:86014400-86066600	Weak transcription	HSMMtube	muscle
20	chr11:86014600-86024000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr11:86014600-86024200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr11:86014600-86024400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr11:86014600-86024400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:86014600-86024600	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr11:86014600-86024600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:86014600-86024600	Weak transcription	HMEC	breast
27	chr11:86014600-86024800	Weak transcription	Primary B cells from peripheral blood	blood
28	chr11:86014600-86024800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr11:86014600-86024800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr11:86014600-86024800	Weak transcription	Liver	Liver
31	chr11:86014600-86024800	Weak transcription	Psoas Muscle	Psoas
32	chr11:86014600-86024800	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr11:86014600-86025000	Weak transcription	Primary B cells from cord blood	blood
34	chr11:86014600-86026600	Weak transcription	Fetal Brain Male	brain
35	chr11:86014600-86026600	Weak transcription	Fetal Intestine Large	intestine
36	chr11:86014600-86026800	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr11:86014600-86029800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:86014600-86029800	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr11:86014600-86030000	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr11:86014600-86030000	Weak transcription	Fetal Brain Female	brain
41	chr11:86014600-86030000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr11:86014600-86031600	Weak transcription	Fetal Lung	lung
43	chr11:86014600-86031600	Weak transcription	Stomach Smooth Muscle	stomach
44	chr11:86014600-86035200	Weak transcription	NH-A	brain
45	chr11:86014600-86045600	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr11:86014600-86045800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr11:86014600-86045800	Weak transcription	Right Ventricle	heart
48	chr11:86014600-86048400	Weak transcription	Brain Germinal Matrix	brain
49	chr11:86014600-86048800	Weak transcription	Thymus	Thymus
50	chr11:86014600-86049000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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