Variant report

Variant	rs10792847
Chromosome Location	chr11:86053419-86053420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10792846	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10898445	0.81[CHD][hapmap]
rs10898470	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11234620	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1215001	0.81[TSI][hapmap]
rs1376944	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1376947	0.81[TSI][hapmap]
rs167086	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs172364	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs19039	0.81[TSI][hapmap]
rs2444025	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2513200	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2600951	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2646727	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2646728	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2646729	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2847471	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs291197	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs291201	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs291202	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs291204	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs291205	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs291208	0.82[EUR][1000 genomes]
rs291209	0.83[EUR][1000 genomes]
rs291212	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs291213	0.93[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs291218	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs291220	0.85[CHD][hapmap];0.81[TSI][hapmap]
rs291223	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs291224	0.88[CEU][hapmap]
rs291230	0.81[TSI][hapmap]
rs291231	0.94[CHB][hapmap];0.92[CHD][hapmap];0.85[JPT][hapmap];0.83[TSI][hapmap]
rs291235	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs291236	0.94[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.85[TSI][hapmap]
rs291239	0.92[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.82[YRI][hapmap]
rs291244	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs291252	0.85[CEU][hapmap];1.00[TSI][hapmap]
rs3016798	0.82[EUR][1000 genomes]
rs35254887	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4424696	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4944565	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592283	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7103304	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114282	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7114791	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7118102	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7122551	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7122914	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7937189	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7938827	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10792847	EED	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86014200-86055400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:86014200-86057400	Weak transcription	Aorta	Aorta
3	chr11:86014400-86066600	Weak transcription	HSMMtube	muscle
4	chr11:86014600-86066400	Weak transcription	Fetal Kidney	kidney
5	chr11:86014800-86058600	Weak transcription	NHLF	lung
6	chr11:86015000-86061000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr11:86015400-86059600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr11:86020400-86057200	Weak transcription	Small Intestine	intestine
9	chr11:86022000-86061000	Weak transcription	Esophagus	oesophagus
10	chr11:86023800-86061200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:86024600-86057400	Weak transcription	Pancreas	Pancrea
12	chr11:86025000-86061600	Weak transcription	Psoas Muscle	Psoas
13	chr11:86025200-86057800	Weak transcription	HepG2	liver
14	chr11:86028400-86059200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:86032600-86057600	Weak transcription	Brain Hippocampus Middle	brain
16	chr11:86033400-86066400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:86033600-86057000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:86035400-86066600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:86035600-86058800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr11:86038000-86059800	Weak transcription	NH-A	brain
21	chr11:86040800-86060800	Weak transcription	Brain Angular Gyrus	brain
22	chr11:86042000-86057600	Weak transcription	NHDF-Ad	bronchial
23	chr11:86047600-86057400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:86047600-86059400	Weak transcription	NHEK	skin
25	chr11:86047800-86067800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr11:86048400-86070200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:86048800-86057400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:86049400-86057600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr11:86049400-86067800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr11:86049600-86056000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:86049600-86057400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:86049600-86057400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr11:86049600-86057400	Weak transcription	Gastric	stomach
34	chr11:86049600-86057400	Weak transcription	Lung	lung
35	chr11:86049600-86057400	Weak transcription	Thymus	Thymus
36	chr11:86049600-86057400	Weak transcription	Spleen	Spleen
37	chr11:86049600-86059000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr11:86049600-86059200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr11:86049600-86059400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr11:86049600-86060800	Weak transcription	A549	lung
41	chr11:86049600-86062600	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr11:86049600-86065200	Weak transcription	Fetal Brain Female	brain
43	chr11:86049600-86066400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr11:86049600-86066800	Weak transcription	HUVEC	blood vessel
45	chr11:86049600-86067600	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr11:86049800-86055000	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr11:86049800-86055400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr11:86049800-86055600	Weak transcription	K562	blood
49	chr11:86049800-86055800	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr11:86049800-86056000	Weak transcription	Dnd41	blood

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