Variant report

Variant	rs291224
Chromosome Location	chr11:85998216-85998217
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85754219..85755757-chr11:85998190..86001098,2	K562	blood:
2	chr11:85992844..85996245-chr11:85997438..86001010,4	K562	blood:
3	chr11:85996870..85999859-chr11:86001615..86003194,2	K562	blood:
4	chr11:85997706..86000207-chr11:86001867..86004535,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254783	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10792847	0.88[CEU][hapmap]
rs10898470	0.92[CEU][hapmap]
rs1376944	0.93[CEU][hapmap]
rs167086	0.93[CEU][hapmap]
rs167087	0.94[EUR][1000 genomes]
rs2600951	0.92[CEU][hapmap]
rs2646727	0.92[CEU][hapmap]
rs2847471	0.92[CEU][hapmap]
rs291231	0.83[EUR][1000 genomes]
rs291232	0.83[EUR][1000 genomes]
rs291235	0.81[EUR][1000 genomes]
rs291236	0.81[EUR][1000 genomes]
rs291239	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs291240	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs291244	0.93[CEU][hapmap];0.95[EUR][1000 genomes]
rs291246	0.80[EUR][1000 genomes]
rs291252	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4424696	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv898055	chr11:85968623-86000757	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv508643	chr11:85988577-86047719	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs291224	EED	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85957400-86008000	Weak transcription	Psoas Muscle	Psoas
2	chr11:85957800-85999800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:85974800-86000000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:85975000-86002600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:85984400-86002800	Weak transcription	Fetal Intestine Small	intestine
6	chr11:85986000-86002600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:85988800-86000000	Weak transcription	Brain Substantia Nigra	brain
8	chr11:85989200-85999800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:85989600-86002800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr11:85989600-86002800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr11:85989600-86003000	Weak transcription	NH-A	brain
12	chr11:85989800-85999200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:85990600-86002400	Weak transcription	HepG2	liver
14	chr11:85990800-86002600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr11:85991200-86002600	Weak transcription	Osteobl	bone
16	chr11:85991400-86002600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr11:85991400-86003200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:85991600-86002600	Weak transcription	NHDF-Ad	bronchial
19	chr11:85991600-86002800	Weak transcription	Placenta	Placenta
20	chr11:85992200-86000800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:85992200-86003200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:85995600-85999200	Weak transcription	Lung	lung
23	chr11:85995600-85999200	Weak transcription	Ovary	ovary
24	chr11:85995600-85999400	Weak transcription	Brain Anterior Caudate	brain
25	chr11:85995600-85999800	Weak transcription	K562	blood
26	chr11:85995600-86000200	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr11:85995600-86000800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr11:85995600-86001400	Weak transcription	Spleen	Spleen
29	chr11:85995600-86001800	Weak transcription	Liver	Liver
30	chr11:85995600-86002600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr11:85995600-86002600	Weak transcription	HMEC	breast
32	chr11:85995600-86002800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:85995600-86002800	Weak transcription	A549	lung
34	chr11:85995600-86003000	Weak transcription	NHLF	lung
35	chr11:85995600-86012600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr11:85995600-86012800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr11:85995800-85998600	Weak transcription	Fetal Muscle Trunk	muscle
38	chr11:85995800-85998600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr11:85995800-85998800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr11:85995800-85999200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr11:85995800-85999400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:85995800-85999800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr11:85995800-86000000	Weak transcription	Hela-S3	cervix
44	chr11:85995800-86000200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:85995800-86000200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr11:85995800-86000600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:85995800-86001800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr11:85995800-86002200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr11:85995800-86002400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:85995800-86002600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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