Variant report

Variant	rs291232
Chromosome Location	chr11:86007435-86007436
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85993708..85996490-chr11:86003264..86007905,4	K562	blood:
2	chr11:85954128..85956868-chr11:86006421..86009541,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000074266	Chromatin interaction
ENSG00000254783	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10792840	0.86[EUR][1000 genomes]
rs10898450	0.86[EUR][1000 genomes]
rs10898454	0.87[EUR][1000 genomes]
rs10898456	0.86[EUR][1000 genomes]
rs11234586	0.84[EUR][1000 genomes]
rs11234592	0.86[EUR][1000 genomes]
rs1215001	0.95[EUR][1000 genomes]
rs12225782	0.86[EUR][1000 genomes]
rs12282663	0.87[EUR][1000 genomes]
rs12577739	0.81[EUR][1000 genomes]
rs12800606	0.81[EUR][1000 genomes]
rs1376947	0.95[EUR][1000 genomes]
rs1391221	0.86[EUR][1000 genomes]
rs167087	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs19039	0.95[EUR][1000 genomes]
rs291224	0.83[EUR][1000 genomes]
rs291225	0.91[EUR][1000 genomes]
rs291227	0.95[EUR][1000 genomes]
rs291228	0.87[EUR][1000 genomes]
rs291230	0.95[EUR][1000 genomes]
rs291231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291233	0.95[EUR][1000 genomes]
rs291234	0.87[EUR][1000 genomes]
rs291235	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs291236	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs291237	0.93[EUR][1000 genomes]
rs291238	0.93[EUR][1000 genomes]
rs291239	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs291240	0.81[EUR][1000 genomes]
rs291242	0.90[EUR][1000 genomes]
rs291244	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs291246	0.80[ASN][1000 genomes]
rs291247	0.86[EUR][1000 genomes]
rs291251	0.95[EUR][1000 genomes]
rs291252	0.83[EUR][1000 genomes]
rs34095340	0.81[EUR][1000 genomes]
rs3923738	0.87[EUR][1000 genomes]
rs4547120	0.87[EUR][1000 genomes]
rs4944562	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv508643	chr11:85988577-86047719	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs291232	EED	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85957400-86008000	Weak transcription	Psoas Muscle	Psoas
2	chr11:85995600-86012600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:85995600-86012800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:85995800-86012600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:85995800-86013200	Weak transcription	Esophagus	oesophagus
6	chr11:85995800-86013200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:85996000-86012800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:85996000-86013000	Weak transcription	Fetal Intestine Large	intestine
9	chr11:86003000-86012600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:86003200-86013000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:86005400-86012600	Weak transcription	GM12878-XiMat	blood

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