Variant report

Variant	rs291239
Chromosome Location	chr11:86011868-86011869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86003733..86005993-chr11:86009757..86012694,4	K562	blood:
2	chr11:85955907..85958640-chr11:86011728..86014261,2	MCF-7	breast:
3	chr11:86010873..86013514-chr11:86034864..86037459,2	K562	blood:

Variant related genes	Relation type
ENSG00000074266	Chromatin interaction
ENSG00000255222	Chromatin interaction
ENSG00000239856	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10792847	0.92[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.82[YRI][hapmap]
rs10898445	0.83[CHB][hapmap]
rs10898470	0.96[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.89[YRI][hapmap]
rs1376944	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap]
rs167086	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[YRI][hapmap]
rs167087	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2600951	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[YRI][hapmap]
rs2646727	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.82[YRI][hapmap]
rs2847471	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.82[YRI][hapmap]
rs291213	1.00[CHB][hapmap];0.80[YRI][hapmap]
rs291224	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs291231	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs291232	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs291235	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs291236	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291240	0.99[EUR][1000 genomes]
rs291244	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs291245	0.80[EUR][1000 genomes]
rs291246	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs291252	0.92[CEU][hapmap];0.97[EUR][1000 genomes]
rs4424696	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv508643	chr11:85988577-86047719	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv519914	chr11:86010789-86013361	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs291239	EED	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85995600-86012600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:85995600-86012800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:85995800-86012600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:85995800-86013200	Weak transcription	Esophagus	oesophagus
5	chr11:85995800-86013200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:85996000-86012800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:85996000-86013000	Weak transcription	Fetal Intestine Large	intestine
8	chr11:86003000-86012600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:86003200-86013000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:86005400-86012600	Weak transcription	GM12878-XiMat	blood
11	chr11:86011400-86012400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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