Variant report

Variant	rs291240
Chromosome Location	chr11:86012211-86012212
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs167087	0.96[EUR][1000 genomes]
rs291224	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs291231	0.81[EUR][1000 genomes]
rs291232	0.81[EUR][1000 genomes]
rs291236	0.83[EUR][1000 genomes]
rs291239	0.99[EUR][1000 genomes]
rs291244	0.97[EUR][1000 genomes]
rs291246	0.82[EUR][1000 genomes]
rs291252	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv508643	chr11:85988577-86047719	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv519914	chr11:86010789-86013361	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs291240	EED	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85995600-86012600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:85995600-86012800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:85995800-86012600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:85995800-86013200	Weak transcription	Esophagus	oesophagus
5	chr11:85995800-86013200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:85996000-86012800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:85996000-86013000	Weak transcription	Fetal Intestine Large	intestine
8	chr11:86003000-86012600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:86003200-86013000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:86005400-86012600	Weak transcription	GM12878-XiMat	blood
11	chr11:86011400-86012400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:86012000-86012600	Enhancers	Fetal Brain Female	brain
13	chr11:86012200-86012600	Enhancers	HepG2	liver
14	chr11:86012200-86012600	Enhancers	K562	blood
15	chr11:86012200-86013000	Flanking Active TSS	Dnd41	blood
16	chr11:86012200-86014800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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