Variant report

Variant	rs6592286
Chromosome Location	chr11:86069663-86069664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10751138	0.87[ASN][1000 genomes]
rs10792852	0.97[ASN][1000 genomes]
rs11234621	0.89[ASN][1000 genomes]
rs11234623	0.97[ASN][1000 genomes]
rs11234625	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11825046	0.89[ASN][1000 genomes]
rs12272468	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2600950	0.84[ASN][1000 genomes]
rs2646732	0.87[ASN][1000 genomes]
rs2847470	0.84[ASN][1000 genomes]
rs291203	0.83[ASN][1000 genomes]
rs291215	0.84[ASN][1000 genomes]
rs291216	0.85[ASN][1000 genomes]
rs291220	0.84[ASN][1000 genomes]
rs291221	0.85[ASN][1000 genomes]
rs292092	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs292093	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs292099	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs292104	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4944567	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4944568	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4944569	0.97[ASN][1000 genomes]
rs6592287	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7106569	0.89[ASN][1000 genomes]
rs7109327	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7109568	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7117195	0.84[ASN][1000 genomes]
rs7124620	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7480354	0.89[ASN][1000 genomes]
rs7937597	0.89[ASN][1000 genomes]
rs7948056	0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6592286	EED	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86048400-86070200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:86050000-86072000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:86058200-86071200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:86058600-86069800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:86058600-86070000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:86066800-86070000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:86067000-86074600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:86067000-86081200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:86067200-86070800	Weak transcription	HUVEC	blood vessel
10	chr11:86068400-86069800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:86068400-86072200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:86068600-86072000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:86068600-86072000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr11:86069000-86070000	Enhancers	H9 Cell Line	embryonic stem cell
15	chr11:86069200-86072000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr11:86069200-86072000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr11:86069400-86071800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr11:86069400-86071800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr11:86069600-86070400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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