Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr11:86083029-86083303	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
CCDC81	TF binding region

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1026244	0.83[EUR][1000 genomes]
rs10898450	0.80[YRI][hapmap]
rs10898455	0.80[YRI][hapmap]
rs10898474	0.90[YRI][hapmap];0.83[EUR][1000 genomes]
rs11234595	0.80[YRI][hapmap]
rs11234625	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12272468	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1376945	0.83[EUR][1000 genomes]
rs1376946	0.82[EUR][1000 genomes]
rs292092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs292093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs292099	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs292109	0.83[EUR][1000 genomes]
rs4944567	0.85[AMR][1000 genomes]
rs4944568	0.87[AMR][1000 genomes]
rs6592286	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6592287	0.87[AMR][1000 genomes]
rs7109327	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109568	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943530	0.83[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs292104	EED	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86080600-86084200	Enhancers	HMEC	breast
2	chr11:86081600-86084600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:86081800-86084400	Enhancers	NHEK	skin
4	chr11:86082000-86083400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:86082000-86084000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:86082400-86085400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:86082600-86083200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:86082600-86083200	Enhancers	Fetal Brain Male	brain
9	chr11:86082600-86084400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:86083000-86083200	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr11:86083000-86083400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:86083000-86085000	Weak transcription	HUVEC	blood vessel
13	chr11:86083000-86085400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr11:86083000-86085600	Weak transcription	Fetal Brain Female	brain
15	chr11:86083000-86085600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr11:86083000-86085800	Weak transcription	Esophagus	oesophagus

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