Variant report

Variant	rs292092
Chromosome Location	chr11:86086581-86086582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1026244	0.84[EUR][1000 genomes]
rs10898474	0.84[ASW][hapmap];0.89[TSI][hapmap];0.90[YRI][hapmap];0.83[EUR][1000 genomes]
rs11234625	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12272468	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1376945	0.84[EUR][1000 genomes]
rs1376946	0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs292093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs292099	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs292104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs292109	0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs292110	0.82[AFR][1000 genomes]
rs4944567	0.82[AMR][1000 genomes]
rs4944568	0.85[AMR][1000 genomes]
rs6592286	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6592287	0.84[AMR][1000 genomes]
rs7109327	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109568	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943530	0.84[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs292092	EED	cis	parietal	SCAN
rs292092	EED	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86084400-86089200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:86085400-86086600	Active TSS	Brain Hippocampus Middle	brain
3	chr11:86085400-86086800	Active TSS	Brain Anterior Caudate	brain
4	chr11:86086000-86102200	Weak transcription	Left Ventricle	heart
5	chr11:86086000-86106200	Weak transcription	Aorta	Aorta
6	chr11:86086200-86086600	Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr11:86086200-86086600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:86086200-86087000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:86086200-86091200	Weak transcription	HUVEC	blood vessel
10	chr11:86086400-86086600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:86086400-86086600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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