Variant report

Variant	rs7943530
Chromosome Location	chr11:86098020-86098021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1026244	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10898474	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272468	0.86[EUR][1000 genomes]
rs1376945	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1376946	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs292092	0.84[EUR][1000 genomes]
rs292093	0.84[EUR][1000 genomes]
rs292099	0.83[EUR][1000 genomes]
rs292104	0.83[EUR][1000 genomes]
rs292109	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109327	0.86[EUR][1000 genomes]
rs7109568	0.86[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86086000-86102200	Weak transcription	Left Ventricle	heart
2	chr11:86086000-86106200	Weak transcription	Aorta	Aorta
3	chr11:86089400-86099400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:86089800-86098800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:86095200-86106200	Weak transcription	Fetal Brain Female	brain
6	chr11:86097600-86098200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:86097600-86098600	Weak transcription	Fetal Brain Male	brain
8	chr11:86097600-86105000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:86097800-86098200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:86097800-86098200	Active TSS	Stomach Smooth Muscle	stomach
11	chr11:86097800-86098800	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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