Variant report

Variant	rs292093
Chromosome Location	chr11:86086393-86086394
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1026244	0.84[EUR][1000 genomes]
rs10898450	0.82[YRI][hapmap]
rs10898455	0.82[YRI][hapmap]
rs10898474	0.90[YRI][hapmap];0.83[EUR][1000 genomes]
rs11234595	0.82[YRI][hapmap]
rs11234625	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12272468	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1376945	0.84[EUR][1000 genomes]
rs1376946	0.83[EUR][1000 genomes]
rs292092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs292099	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs292104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs292109	0.84[EUR][1000 genomes]
rs292110	0.82[AFR][1000 genomes]
rs4944567	0.82[AMR][1000 genomes]
rs4944568	0.85[AMR][1000 genomes]
rs6592286	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6592287	0.84[AMR][1000 genomes]
rs7109327	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109568	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943530	0.84[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs292093	EED	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86084400-86089200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:86085400-86086400	Active TSS	H9 Cell Line	embryonic stem cell
3	chr11:86085400-86086400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:86085400-86086400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:86085400-86086600	Active TSS	Brain Hippocampus Middle	brain
6	chr11:86085400-86086800	Active TSS	Brain Anterior Caudate	brain
7	chr11:86085600-86086400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr11:86085600-86086400	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr11:86085600-86086400	Active TSS	Brain Germinal Matrix	brain
10	chr11:86086000-86086400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:86086000-86086400	Enhancers	Fetal Stomach	stomach
12	chr11:86086000-86102200	Weak transcription	Left Ventricle	heart
13	chr11:86086000-86106200	Weak transcription	Aorta	Aorta
14	chr11:86086200-86086400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:86086200-86086400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr11:86086200-86086400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr11:86086200-86086400	Enhancers	Fetal Muscle Leg	muscle
18	chr11:86086200-86086400	Enhancers	Ovary	ovary
19	chr11:86086200-86086600	Active TSS	iPS-18 Cell Line	embryonic stem cell
20	chr11:86086200-86086600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:86086200-86087000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:86086200-86091200	Weak transcription	HUVEC	blood vessel

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