Variant report

Variant	rs11235142
Chromosome Location	chr11:87148742-87148743
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10792954	0.83[EUR][1000 genomes]
rs10898697	0.82[EUR][1000 genomes]
rs10898700	0.82[EUR][1000 genomes]
rs11235145	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235148	0.88[EUR][1000 genomes]
rs11235152	0.83[EUR][1000 genomes]
rs11601489	0.82[EUR][1000 genomes]
rs12284060	0.83[AMR][1000 genomes]
rs12293133	0.83[EUR][1000 genomes]
rs12295277	0.83[EUR][1000 genomes]
rs2186726	0.83[AMR][1000 genomes]
rs4373960	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4424691	0.85[EUR][1000 genomes]
rs4514448	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4943984	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4943985	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7114108	0.88[AFR][1000 genomes]
rs7131614	0.83[AMR][1000 genomes]
rs7927205	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8181565	0.91[AFR][1000 genomes]
rs875751	0.83[AMR][1000 genomes]
rs875752	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87142800-87150800	Weak transcription	Right Atrium	heart
2	chr11:87143800-87155800	Weak transcription	Adipose Nuclei	Adipose
3	chr11:87144400-87149600	Weak transcription	HSMMtube	muscle
4	chr11:87144800-87150800	Weak transcription	Colon Smooth Muscle	Colon
5	chr11:87147400-87152200	Enhancers	NHLF	lung
6	chr11:87147800-87149000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:87147800-87149800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:87148000-87150200	Enhancers	Osteobl	bone
9	chr11:87148200-87149000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:87148200-87149000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:87148200-87149600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:87148200-87149800	Enhancers	NH-A	brain
13	chr11:87148400-87148800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:87148400-87149000	Enhancers	Fetal Heart	heart
15	chr11:87148400-87149600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:87148400-87149600	Enhancers	HMEC	breast
17	chr11:87148400-87149800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:87148400-87149800	Enhancers	NHEK	skin
19	chr11:87148400-87152000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:87148400-87152000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr11:87148400-87152200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:87148400-87153000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:87148400-87157600	Enhancers	NHDF-Ad	bronchial
24	chr11:87148600-87149000	Enhancers	Placenta Amnion	Placenta Amnion
25	chr11:87148600-87152600	Enhancers	HSMM	muscle

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