Variant report

Variant	rs11235148
Chromosome Location	chr11:87154923-87154924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:87150046..87153328-chr11:87153657..87156160,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10792954	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10898697	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10898700	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11235142	0.88[EUR][1000 genomes]
rs11235145	0.85[EUR][1000 genomes]
rs11235151	0.80[AMR][1000 genomes]
rs11235152	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11235156	0.84[AMR][1000 genomes]
rs11601489	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12281894	0.82[AMR][1000 genomes]
rs12293133	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12295277	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4127380	0.88[AMR][1000 genomes]
rs4127381	0.88[AMR][1000 genomes]
rs4373960	0.89[EUR][1000 genomes]
rs4424691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4514448	0.89[EUR][1000 genomes]
rs4943984	0.89[EUR][1000 genomes]
rs4943985	0.89[EUR][1000 genomes]
rs4944708	0.81[AMR][1000 genomes]
rs722620	0.80[AMR][1000 genomes]
rs7927205	0.81[EUR][1000 genomes]
rs7946298	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87143800-87155800	Weak transcription	Adipose Nuclei	Adipose
2	chr11:87148400-87157600	Enhancers	NHDF-Ad	bronchial
3	chr11:87149600-87155400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:87149600-87162000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:87149800-87155400	Weak transcription	NH-A	brain
6	chr11:87149800-87155600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:87151600-87165200	Weak transcription	Colon Smooth Muscle	Colon
8	chr11:87152000-87155000	Weak transcription	Osteobl	bone
9	chr11:87152000-87155600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr11:87152200-87155200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:87152200-87156200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:87152400-87155400	Weak transcription	HSMMtube	muscle
13	chr11:87152600-87155400	Weak transcription	HSMM	muscle
14	chr11:87153000-87155200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:87153800-87156800	Enhancers	Fetal Heart	heart
16	chr11:87154200-87157000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:87154600-87157600	Enhancers	NHLF	lung
18	chr11:87154600-87157800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:87154800-87157000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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