Variant report

Variant	rs4943984
Chromosome Location	chr11:87147125-87147126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10792954	0.84[EUR][1000 genomes]
rs10898697	0.83[EUR][1000 genomes]
rs10898700	0.84[EUR][1000 genomes]
rs11235142	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11235145	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11235148	0.89[EUR][1000 genomes]
rs11235152	0.86[EUR][1000 genomes]
rs11601489	0.83[EUR][1000 genomes]
rs12293133	0.85[EUR][1000 genomes]
rs12295277	0.85[EUR][1000 genomes]
rs2186726	0.86[AMR][1000 genomes]
rs4373960	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4424691	0.86[EUR][1000 genomes]
rs4445657	0.81[AMR][1000 genomes]
rs4514448	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943985	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927205	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87142800-87147600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:87142800-87150800	Weak transcription	Right Atrium	heart
3	chr11:87143600-87148200	Weak transcription	NH-A	brain
4	chr11:87143800-87155800	Weak transcription	Adipose Nuclei	Adipose
5	chr11:87144000-87148000	Weak transcription	Osteobl	bone
6	chr11:87144000-87148200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:87144000-87148400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:87144000-87148400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:87144000-87148400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:87144000-87148600	Weak transcription	HSMM	muscle
11	chr11:87144400-87148400	Weak transcription	NHDF-Ad	bronchial
12	chr11:87144400-87149600	Weak transcription	HSMMtube	muscle
13	chr11:87144800-87150800	Weak transcription	Colon Smooth Muscle	Colon
14	chr11:87145400-87147800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:87145800-87147400	Weak transcription	NHLF	lung
16	chr11:87145800-87147800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:87145800-87148400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:87145800-87148400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links