Variant report

Variant	rs11235151
Chromosome Location	chr11:87160420-87160421
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10751160	0.95[ASN][1000 genomes]
rs10751161	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10751162	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10751163	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10792954	0.82[AMR][1000 genomes]
rs10792955	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10898697	0.82[AMR][1000 genomes]
rs10898700	0.82[AMR][1000 genomes]
rs11235148	0.80[AMR][1000 genomes]
rs11235149	0.95[ASN][1000 genomes]
rs11235152	0.85[AMR][1000 genomes]
rs11235153	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11235156	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11601489	0.82[AMR][1000 genomes]
rs12281894	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12284060	0.85[EUR][1000 genomes]
rs12293133	0.80[AMR][1000 genomes]
rs12295277	0.81[AMR][1000 genomes]
rs2186726	0.85[EUR][1000 genomes]
rs2186728	0.82[EUR][1000 genomes]
rs4127380	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4127381	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4424691	0.80[AMR][1000 genomes]
rs4445657	0.86[EUR][1000 genomes]
rs4944708	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7107761	0.95[ASN][1000 genomes]
rs7111686	0.80[ASN][1000 genomes]
rs7131614	0.87[EUR][1000 genomes]
rs722620	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932908	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7946246	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7946298	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs875751	0.83[EUR][1000 genomes]
rs875752	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87149600-87162000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:87151600-87165200	Weak transcription	Colon Smooth Muscle	Colon
3	chr11:87156400-87165000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:87156800-87164000	Weak transcription	Fetal Heart	heart
5	chr11:87156800-87164800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:87157000-87161800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:87157000-87161800	Weak transcription	HSMM	muscle
8	chr11:87157000-87162000	Weak transcription	HSMMtube	muscle
9	chr11:87157000-87162600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr11:87157000-87165000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:87157200-87162200	Weak transcription	Osteobl	bone
12	chr11:87157600-87161800	Weak transcription	NHLF	lung
13	chr11:87157600-87162200	Weak transcription	NHDF-Ad	bronchial
14	chr11:87157800-87164600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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