Variant report

Variant	rs11235149
Chromosome Location	chr11:87156872-87156873
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1001592	0.84[EUR][1000 genomes]
rs10751160	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751161	0.94[ASN][1000 genomes]
rs10751162	0.94[ASN][1000 genomes]
rs10751163	0.94[ASN][1000 genomes]
rs10792955	0.94[ASN][1000 genomes]
rs11235140	0.85[EUR][1000 genomes]
rs11235146	0.87[EUR][1000 genomes]
rs11235151	0.95[ASN][1000 genomes]
rs11235153	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12281894	0.93[ASN][1000 genomes]
rs2212463	0.85[EUR][1000 genomes]
rs4127380	1.00[ASN][1000 genomes]
rs4127381	1.00[ASN][1000 genomes]
rs4944707	0.93[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4944708	0.98[ASN][1000 genomes]
rs7107761	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111686	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7127837	0.88[EUR][1000 genomes]
rs722620	0.95[ASN][1000 genomes]
rs7932908	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7946246	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7946298	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87148400-87157600	Enhancers	NHDF-Ad	bronchial
2	chr11:87149600-87162000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:87151600-87165200	Weak transcription	Colon Smooth Muscle	Colon
4	chr11:87154200-87157000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:87154600-87157600	Enhancers	NHLF	lung
6	chr11:87154600-87157800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:87154800-87157000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:87155000-87157200	Enhancers	Osteobl	bone
9	chr11:87155200-87157000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:87155200-87157000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:87155400-87157000	Enhancers	HSMM	muscle
12	chr11:87155400-87157000	Enhancers	HSMMtube	muscle
13	chr11:87155600-87157000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr11:87156200-87157000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr11:87156400-87165000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:87156800-87164000	Weak transcription	Fetal Heart	heart
17	chr11:87156800-87164800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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