Variant report

Variant	rs11235153
Chromosome Location	chr11:87165439-87165440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:87134513..87137251-chr11:87164100..87165972,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1001592	0.83[EUR][1000 genomes]
rs10751160	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10751161	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10751162	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10751163	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10792955	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11235140	0.86[EUR][1000 genomes]
rs11235146	0.84[EUR][1000 genomes]
rs11235149	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11235151	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11235156	0.81[ASN][1000 genomes]
rs12281894	0.99[ASN][1000 genomes]
rs2212463	0.83[EUR][1000 genomes]
rs4127380	0.94[ASN][1000 genomes]
rs4127381	0.94[ASN][1000 genomes]
rs4944707	0.85[EUR][1000 genomes]
rs4944708	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7107761	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7111686	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7127837	0.89[EUR][1000 genomes]
rs722620	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7932908	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7946246	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7946298	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv832224	chr11:87162121-87355923	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3347109	chr11:87163383-87245753	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3357299	chr11:87163584-87245523	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87164000-87165800	Enhancers	Fetal Heart	heart
2	chr11:87164600-87165600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:87164600-87165800	Enhancers	HSMM	muscle
4	chr11:87164800-87165600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:87164800-87165600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:87164800-87165600	Enhancers	Pancreas	Pancrea
7	chr11:87165000-87165600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:87165000-87165600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:87165000-87165600	Enhancers	Osteobl	bone
10	chr11:87165000-87165800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:87165200-87165600	Enhancers	Colon Smooth Muscle	Colon
12	chr11:87165400-87165800	Enhancers	Fetal Kidney	kidney
13	chr11:87165400-87166800	Enhancers	GM12878-XiMat	blood

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