Variant report

Variant	rs7127837
Chromosome Location	chr11:87141927-87141928
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1001592	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10751160	0.88[EUR][1000 genomes]
rs11235140	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235146	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11235149	0.88[EUR][1000 genomes]
rs11235153	0.89[EUR][1000 genomes]
rs12284060	0.96[ASN][1000 genomes]
rs2186726	0.95[ASN][1000 genomes]
rs2186728	0.87[ASN][1000 genomes]
rs2212463	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4445657	0.95[ASN][1000 genomes]
rs4944707	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7107761	0.88[EUR][1000 genomes]
rs7111686	0.85[EUR][1000 genomes]
rs7131614	0.96[ASN][1000 genomes]
rs7932908	0.87[EUR][1000 genomes]
rs7946246	0.81[EUR][1000 genomes]
rs875751	0.96[ASN][1000 genomes]
rs875752	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87131000-87143000	Weak transcription	Adipose Nuclei	Adipose
2	chr11:87137000-87147000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:87137800-87143000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:87137800-87143200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:87138800-87144400	Enhancers	NHDF-Ad	bronchial
6	chr11:87139600-87142400	Weak transcription	HSMM	muscle
7	chr11:87139600-87142600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:87139600-87142800	Weak transcription	NH-A	brain
9	chr11:87139600-87144600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:87139800-87142000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:87140200-87142400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:87140600-87142000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:87141400-87142600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:87141600-87142200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:87141600-87142800	Enhancers	HUVEC	blood vessel
16	chr11:87141600-87144000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr11:87141600-87144000	Enhancers	Osteobl	bone
18	chr11:87141600-87144400	Enhancers	HSMMtube	muscle
19	chr11:87141600-87145400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:87141800-87142000	Enhancers	Right Atrium	heart
21	chr11:87141800-87142000	Enhancers	NHLF	lung
22	chr11:87141800-87142200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:87141800-87142800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr11:87141800-87142800	Enhancers	Fetal Muscle Trunk	muscle
25	chr11:87141800-87143200	Enhancers	Fetal Muscle Leg	muscle
26	chr11:87141800-87144000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr11:87141800-87144000	Enhancers	Ovary	ovary
28	chr11:87141800-87145800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:87141800-87145800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links