Variant report

Variant	rs2186728
Chromosome Location	chr11:87135674-87135675
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:87134513..87137251-chr11:87164100..87165972,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1001592	0.96[ASN][1000 genomes]
rs10751161	0.82[EUR][1000 genomes]
rs10751162	0.82[EUR][1000 genomes]
rs10751163	0.82[EUR][1000 genomes]
rs10792955	0.82[EUR][1000 genomes]
rs11235140	0.87[ASN][1000 genomes]
rs11235146	0.86[ASN][1000 genomes]
rs11235151	0.82[EUR][1000 genomes]
rs11235156	0.82[EUR][1000 genomes]
rs12281894	0.82[EUR][1000 genomes]
rs12284060	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2186726	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2212463	0.86[ASN][1000 genomes]
rs4127380	0.83[EUR][1000 genomes]
rs4127381	0.83[EUR][1000 genomes]
rs4445657	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4944707	0.86[ASN][1000 genomes]
rs4944708	0.83[EUR][1000 genomes]
rs7127837	0.87[ASN][1000 genomes]
rs7131614	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs722620	0.82[EUR][1000 genomes]
rs7946298	0.81[EUR][1000 genomes]
rs875751	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs875752	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87131000-87143000	Weak transcription	Adipose Nuclei	Adipose
2	chr11:87133600-87136400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:87133600-87136600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:87133800-87135800	Weak transcription	Osteobl	bone
5	chr11:87133800-87136000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:87133800-87136000	Weak transcription	NHLF	lung
7	chr11:87134000-87135800	Weak transcription	HSMM	muscle
8	chr11:87134000-87136000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:87134000-87136200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:87134000-87136200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:87134000-87136200	Weak transcription	NH-A	brain
12	chr11:87134000-87136400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:87134000-87136400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:87134000-87137200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:87134200-87136000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:87134200-87136400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:87134200-87136800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:87134200-87137200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr11:87134400-87136200	Weak transcription	NHEK	skin
20	chr11:87134400-87136600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr11:87135000-87136400	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:87135000-87138600	Weak transcription	Pancreas	Pancrea
23	chr11:87135600-87137800	Enhancers	NHDF-Ad	bronchial
24	chr11:87135600-87138000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:87135600-87140600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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