Variant report

Variant	rs11235637
Chromosome Location	chr11:72735252-72735253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72502299..72505277-chr11:72732916..72736864,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000186635	Chromatin interaction
ENSG00000214530	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11235621	1.00[LWK][hapmap]
rs12418521	1.00[LWK][hapmap]
rs12808532	1.00[LWK][hapmap]
rs1460035	1.00[LWK][hapmap]
rs1620	1.00[LWK][hapmap]
rs479093	1.00[LWK][hapmap]
rs7937866	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422418	chr11:72646518-72807865	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv555411	chr11:72647296-72800970	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72722200-72738600	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr11:72722600-72738800	Weak transcription	Aorta	Aorta
3	chr11:72722600-72743600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr11:72722600-72746400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:72722800-72737800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr11:72722800-72738600	Weak transcription	Fetal Stomach	stomach
7	chr11:72722800-72738600	Weak transcription	Fetal Thymus	thymus
8	chr11:72722800-72738600	Weak transcription	Left Ventricle	heart
9	chr11:72722800-72738800	Weak transcription	Thymus	Thymus
10	chr11:72723000-72735400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr11:72723000-72737800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr11:72723000-72739000	Weak transcription	Right Ventricle	heart
13	chr11:72723600-72738000	Weak transcription	NHLF	lung
14	chr11:72724400-72739200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:72724400-72761000	Weak transcription	HSMM	muscle
16	chr11:72728400-72739000	Weak transcription	Gastric	stomach
17	chr11:72730400-72738800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:72730800-72751000	Weak transcription	HSMMtube	muscle
19	chr11:72732400-72741600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:72732800-72744600	ZNF genes & repeats	GM12878-XiMat	blood
21	chr11:72733800-72739800	ZNF genes & repeats	Primary B cells from cord blood	blood
22	chr11:72734200-72755200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:72734600-72735800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
24	chr11:72734600-72741000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
25	chr11:72734800-72735600	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr11:72734800-72736000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
27	chr11:72735200-72736600	ZNF genes & repeats	Psoas Muscle	Psoas

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