Variant report

Variant	rs11235621
Chromosome Location	chr11:72682488-72682489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72682058..72684979-chr11:72694471..72696981,2	MCF-7	breast:
2	chr11:72533161..72535862-chr11:72680892..72683128,2	K562	blood:
3	chr11:72681582..72683189-chr11:72684693..72686760,2	K562	blood:
4	chr11:72679416..72681431-chr11:72682250..72684865,2	K562	blood:
5	chr11:72676395..72677930-chr11:72681229..72683225,2	K562	blood:

Variant related genes	Relation type
ENSG00000168010	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10898899	1.00[MEX][hapmap]
rs11235637	1.00[LWK][hapmap]
rs12418521	1.00[LWK][hapmap];1.00[MEX][hapmap]
rs12808532	1.00[LWK][hapmap]
rs1460035	1.00[LWK][hapmap]
rs1620	1.00[LWK][hapmap]
rs1807188	1.00[LWK][hapmap]
rs479093	1.00[LWK][hapmap]
rs508532	1.00[MEX][hapmap]
rs7937866	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2422418	chr11:72646518-72807865	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv555411	chr11:72647296-72800970	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72633000-72684000	Weak transcription	Primary T cells from cord blood	blood
2	chr11:72636200-72694800	Weak transcription	Adipose Nuclei	Adipose
3	chr11:72636400-72712600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:72637000-72721600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:72649000-72721600	Weak transcription	Thymus	Thymus
6	chr11:72651400-72696600	Weak transcription	Brain Anterior Caudate	brain
7	chr11:72663200-72682600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr11:72663200-72683600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr11:72666200-72689600	Weak transcription	Esophagus	oesophagus
10	chr11:72666600-72721600	Weak transcription	Lung	lung
11	chr11:72667000-72700600	Weak transcription	Brain Angular Gyrus	brain
12	chr11:72669400-72689600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:72669800-72684800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:72669800-72721800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr11:72671000-72689400	Weak transcription	Fetal Lung	lung
16	chr11:72671200-72687400	Weak transcription	Fetal Brain Female	brain
17	chr11:72672000-72682600	Weak transcription	Small Intestine	intestine
18	chr11:72673000-72708000	Weak transcription	Colon Smooth Muscle	Colon
19	chr11:72674600-72687200	Weak transcription	Placenta	Placenta
20	chr11:72675000-72683800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr11:72675000-72687400	Weak transcription	Fetal Muscle Leg	muscle
22	chr11:72675000-72692000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr11:72675000-72692800	Weak transcription	HepG2	liver
24	chr11:72675200-72700600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:72675600-72687200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr11:72675600-72696600	Weak transcription	Brain Substantia Nigra	brain
27	chr11:72675600-72696800	Weak transcription	Fetal Kidney	kidney
28	chr11:72675800-72690600	Weak transcription	Liver	Liver
29	chr11:72675800-72700800	Weak transcription	Spleen	Spleen
30	chr11:72679400-72687600	Enhancers	NHDF-Ad	bronchial
31	chr11:72679600-72687600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:72680000-72683000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr11:72680000-72683400	Enhancers	Dnd41	blood
34	chr11:72680000-72683600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr11:72680000-72684800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:72680000-72684800	Enhancers	Osteobl	bone
37	chr11:72680200-72682600	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr11:72680200-72682800	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr11:72680200-72682800	Enhancers	K562	blood
40	chr11:72680200-72683800	Enhancers	HSMMtube	muscle
41	chr11:72680200-72684200	Enhancers	Fetal Heart	heart
42	chr11:72680200-72687600	Enhancers	Muscle Satellite Cultured Cells	--
43	chr11:72680200-72689600	Weak transcription	Fetal Thymus	thymus
44	chr11:72680400-72682800	Enhancers	Ovary	ovary
45	chr11:72680600-72682800	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr11:72680600-72687800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:72680800-72682800	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr11:72680800-72683000	Enhancers	HSMM	muscle
49	chr11:72680800-72684000	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr11:72680800-72684000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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