Variant report

Variant	rs11235716
Chromosome Location	chr11:73010430-73010431
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73008316..73010568-chr11:73017508..73019112,2	MCF-7	breast:
2	chr11:73006667..73009055-chr11:73009354..73011828,3	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1107037	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1107038	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1107039	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235718	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826797	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272360	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273234	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12279235	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12290082	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293779	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17310347	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938776	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938779	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2017066	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3887105	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55664562	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55669228	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55732055	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55885773	1.00[ASN][1000 genomes]
rs55921075	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55980420	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56012762	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56140159	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56184513	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56334857	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56394842	1.00[ASN][1000 genomes]
rs56665358	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56775065	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59127043	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61749197	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73542448	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73542460	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941389	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs874456	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv520665	chr11:72999221-73061856	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73000600-73011200	Weak transcription	Aorta	Aorta
2	chr11:73000800-73018000	Weak transcription	Pancreas	Pancrea
3	chr11:73001200-73010800	Weak transcription	Adipose Nuclei	Adipose
4	chr11:73004000-73011600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:73004400-73010800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:73004400-73011400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:73006600-73011400	Weak transcription	Fetal Muscle Leg	muscle
8	chr11:73006600-73011600	Weak transcription	HSMMtube	muscle
9	chr11:73006600-73018000	Weak transcription	Right Atrium	heart
10	chr11:73006800-73017600	Weak transcription	Fetal Heart	heart
11	chr11:73007000-73011400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:73007000-73017800	Weak transcription	Osteobl	bone
13	chr11:73007200-73011400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:73007200-73011600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:73008200-73010800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:73008200-73017800	Weak transcription	Right Ventricle	heart
17	chr11:73009000-73012200	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr11:73009400-73011800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:73009400-73011800	Weak transcription	Spleen	Spleen
20	chr11:73009400-73017200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr11:73009400-73017400	Weak transcription	A549	lung
22	chr11:73009600-73010600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:73009600-73010800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:73009600-73010800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:73009800-73011600	Weak transcription	Fetal Intestine Large	intestine
26	chr11:73009800-73011800	Weak transcription	Placenta	Placenta
27	chr11:73010200-73012200	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr11:73010200-73012200	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr11:73010200-73017400	Weak transcription	Fetal Intestine Small	intestine

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