Variant report

Variant	rs1938776
Chromosome Location	chr11:73028078-73028079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73004772..73007681-chr11:73025999..73028203,2	MCF-7	breast:
2	chr11:73022279..73024730-chr11:73026577..73028297,2	K562	blood:
3	chr11:73022132..73024730-chr11:73025470..73028297,3	K562	blood:
4	chr11:73011766..73013330-chr11:73026654..73028926,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110237	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1107037	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1107038	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1107039	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235716	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235718	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826797	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.96[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272360	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273234	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12279235	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12290082	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291164	0.86[AFR][1000 genomes]
rs12293779	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17310347	0.91[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938779	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2017066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3887105	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55664562	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55669228	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55732055	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55851019	0.84[AFR][1000 genomes]
rs55885773	1.00[ASN][1000 genomes]
rs55921075	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55980420	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56012762	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56140159	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56184513	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56334857	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56394842	1.00[ASN][1000 genomes]
rs56665358	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56775065	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58053874	0.84[AFR][1000 genomes]
rs59127043	0.97[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61749197	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73542448	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73542460	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941389	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs874456	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv520665	chr11:72999221-73061856	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73023000-73029200	Enhancers	Placenta Amnion	Placenta Amnion
2	chr11:73023000-73029600	Flanking Active TSS	Stomach Smooth Muscle	stomach
3	chr11:73024000-73029400	Enhancers	Brain Angular Gyrus	brain
4	chr11:73024000-73030000	Enhancers	Lung	lung
5	chr11:73024400-73029200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:73024400-73029600	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr11:73024400-73037000	Enhancers	Placenta	Placenta
8	chr11:73024600-73029200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:73024800-73028400	Enhancers	Spleen	Spleen
10	chr11:73024800-73037000	Genic enhancers	Fetal Intestine Small	intestine
11	chr11:73025000-73029400	Enhancers	Fetal Lung	lung
12	chr11:73025000-73029600	Enhancers	Fetal Brain Male	brain
13	chr11:73025000-73029800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr11:73025200-73029800	Enhancers	Primary hematopoietic stem cells	blood
15	chr11:73025200-73030000	Enhancers	Right Atrium	heart
16	chr11:73025200-73031200	Enhancers	Brain Anterior Caudate	brain
17	chr11:73025400-73029000	Enhancers	Ovary	ovary
18	chr11:73025400-73029600	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr11:73025400-73037200	Enhancers	Left Ventricle	heart
20	chr11:73025600-73029400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:73025600-73031200	Genic enhancers	Fetal Intestine Large	intestine
22	chr11:73025600-73033000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:73025600-73033400	Weak transcription	Liver	Liver
24	chr11:73025800-73031400	Enhancers	Brain Substantia Nigra	brain
25	chr11:73025800-73038400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr11:73026000-73028200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:73026000-73028400	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr11:73026000-73029200	Enhancers	NH-A	brain
29	chr11:73026000-73030200	Weak transcription	Thymus	Thymus
30	chr11:73026000-73030400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:73026000-73031800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr11:73026000-73032400	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr11:73026000-73032800	Weak transcription	A549	lung
34	chr11:73026000-73033000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr11:73026000-73034400	Weak transcription	Hela-S3	cervix
36	chr11:73026200-73030600	Enhancers	NHDF-Ad	bronchial
37	chr11:73026200-73031000	Enhancers	Brain Cingulate Gyrus	brain
38	chr11:73026200-73031800	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr11:73026200-73031800	Genic enhancers	Fetal Muscle Leg	muscle
40	chr11:73026200-73032000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr11:73026200-73032000	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr11:73026400-73029600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:73026400-73029800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr11:73026400-73031600	Enhancers	Brain Hippocampus Middle	brain
45	chr11:73026400-73031800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr11:73026400-73036800	Enhancers	Fetal Heart	heart
47	chr11:73026600-73028200	Weak transcription	Colonic Mucosa	Colon
48	chr11:73026600-73029800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:73026600-73031200	Weak transcription	HMEC	breast
50	chr11:73026600-73031400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland

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