Variant report

Variant	rs11235791
Chromosome Location	chr11:73234183-73234184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73231178..73234417-chr11:73236795..73240578,4	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10898921	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235736	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11235772	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235783	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235784	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235786	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235787	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235790	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235796	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235802	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235803	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11235807	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235810	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11235811	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11235816	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417351	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417890	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417977	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420228	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421012	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132126	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17244589	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1808095	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1939383	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3087498	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34493385	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55885773	0.88[EUR][1000 genomes]
rs56277844	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56375530	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56394842	0.95[EUR][1000 genomes]
rs57225667	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60203229	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61018857	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv508641	chr11:73149281-73235528	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1048171	chr11:73210060-73271831	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73202400-73240000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:73205000-73239600	Weak transcription	Primary B cells from cord blood	blood
3	chr11:73205600-73236400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:73205800-73241400	Weak transcription	Pancreas	Pancrea
5	chr11:73219200-73241400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr11:73221200-73238000	Weak transcription	Psoas Muscle	Psoas
7	chr11:73221400-73238200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr11:73221800-73239600	Weak transcription	Liver	Liver
9	chr11:73226400-73239600	Weak transcription	Fetal Stomach	stomach
10	chr11:73230000-73234600	Enhancers	Dnd41	blood
11	chr11:73230800-73239600	Weak transcription	NHDF-Ad	bronchial
12	chr11:73232600-73239800	Weak transcription	Thymus	Thymus
13	chr11:73232600-73249400	Weak transcription	Brain Germinal Matrix	brain
14	chr11:73232800-73235600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr11:73233000-73234400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:73233000-73234600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:73233000-73234600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr11:73233000-73236400	Weak transcription	Brain Anterior Caudate	brain
19	chr11:73233000-73237600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:73233000-73237600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:73233000-73238000	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:73233000-73238200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr11:73233000-73239600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:73233000-73239600	Weak transcription	Primary B cells from peripheral blood	blood
25	chr11:73233000-73239600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:73233000-73240000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr11:73233000-73241400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr11:73233200-73237400	Weak transcription	Brain Hippocampus Middle	brain
29	chr11:73233200-73237400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr11:73233200-73237600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr11:73233200-73238000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:73233200-73238000	Weak transcription	Brain Angular Gyrus	brain
33	chr11:73233200-73238000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr11:73233200-73238000	Weak transcription	NH-A	brain
35	chr11:73233200-73238200	Weak transcription	Osteobl	bone
36	chr11:73233400-73237400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:73233400-73237400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:73233400-73238200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr11:73233400-73239200	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr11:73233400-73239200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr11:73233800-73234600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr11:73233800-73237600	Weak transcription	Primary T cells from cord blood	blood
43	chr11:73234000-73234200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
44	chr11:73234000-73234200	Enhancers	Brain Substantia Nigra	brain
45	chr11:73234000-73235200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links