Variant report

Variant	rs1808095
Chromosome Location	chr11:73279856-73279857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73275181..73277869-chr11:73279088..73282119,3	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10898921	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11235736	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11235772	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11235783	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11235784	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11235786	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11235787	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11235789	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11235790	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11235791	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11235792	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11235796	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11235802	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11235803	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11235807	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11235810	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235811	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235816	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12417351	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12417890	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12417977	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12418558	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12420228	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12421012	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17132126	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17244589	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1939383	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3087498	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34493385	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55885773	0.85[EUR][1000 genomes]
rs56277844	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56375530	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56394842	0.92[EUR][1000 genomes]
rs57225667	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60203229	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61018857	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv983188	chr11:73273934-73307064	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73250000-73307800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr11:73250800-73282800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr11:73251000-73288800	Weak transcription	Thymus	Thymus
4	chr11:73253800-73307000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:73262200-73281000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:73263200-73306000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:73263800-73288800	Weak transcription	Colon Smooth Muscle	Colon
8	chr11:73264600-73287000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr11:73265400-73287200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:73266400-73280000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:73266600-73307800	Weak transcription	Fetal Intestine Small	intestine
12	chr11:73267400-73281400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:73267400-73284800	Weak transcription	Right Atrium	heart
14	chr11:73268400-73281000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:73270600-73288000	Weak transcription	NHLF	lung
16	chr11:73272200-73307600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:73274600-73287000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:73274600-73287000	Weak transcription	Brain Substantia Nigra	brain
19	chr11:73274800-73290800	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr11:73275200-73286800	Weak transcription	Brain Anterior Caudate	brain
21	chr11:73275200-73287000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr11:73275400-73284600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:73275400-73288800	Weak transcription	GM12878-XiMat	blood
24	chr11:73275400-73307000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr11:73276200-73287200	Weak transcription	Brain Angular Gyrus	brain
26	chr11:73276400-73287400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:73276400-73289800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:73276400-73296800	Weak transcription	Fetal Muscle Leg	muscle
29	chr11:73276400-73299200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr11:73276400-73307000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr11:73276600-73286800	Weak transcription	Fetal Brain Female	brain
32	chr11:73277000-73281200	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr11:73277200-73285800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr11:73277200-73299600	Weak transcription	Primary B cells from peripheral blood	blood
35	chr11:73277400-73280600	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr11:73277400-73281600	Weak transcription	HSMM	muscle
37	chr11:73277400-73307800	Weak transcription	Fetal Intestine Large	intestine
38	chr11:73277600-73280200	Weak transcription	HMEC	breast
39	chr11:73277600-73281000	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr11:73277600-73286800	Weak transcription	Brain Germinal Matrix	brain
41	chr11:73277600-73287200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr11:73277600-73293800	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr11:73278000-73280600	Strong transcription	Primary B cells from cord blood	blood
44	chr11:73278000-73281200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr11:73278000-73281200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr11:73278000-73288000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr11:73278200-73280000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr11:73278200-73280200	Weak transcription	Small Intestine	intestine
49	chr11:73278200-73280400	Weak transcription	Lung	lung
50	chr11:73278200-73281200	Weak transcription	Muscle Satellite Cultured Cells	--

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