Variant report

Variant	rs11235803
Chromosome Location	chr11:73266005-73266006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73262802..73266231-chr11:73269278..73271662,3	K562	blood:
2	chr11:73265451..73268306-chr11:73275988..73278927,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10898921	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11235736	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11235772	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11235783	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11235784	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11235786	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11235787	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11235789	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11235790	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11235791	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11235792	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11235796	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11235802	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11235807	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11235810	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11235811	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11235816	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12417351	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12417890	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12417977	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12418558	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12420228	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12421012	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17132126	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17244589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1808095	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1939383	0.89[CEU][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3087498	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34493385	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55885773	0.83[EUR][1000 genomes]
rs56277844	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56375530	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56394842	0.91[EUR][1000 genomes]
rs57225667	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60203229	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61018857	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv1048171	chr11:73210060-73271831	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73243400-73279600	Weak transcription	Fetal Stomach	stomach
2	chr11:73249600-73266400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:73249600-73276000	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:73250000-73307800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr11:73250200-73266400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:73250200-73278800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr11:73250800-73282800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr11:73251000-73288800	Weak transcription	Thymus	Thymus
9	chr11:73253800-73307000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr11:73258800-73278000	Weak transcription	Primary B cells from cord blood	blood
11	chr11:73262200-73281000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr11:73262600-73276800	Weak transcription	Brain Germinal Matrix	brain
13	chr11:73263000-73266200	Weak transcription	Ovary	ovary
14	chr11:73263200-73269000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:73263200-73276000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:73263200-73306000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:73263400-73270800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr11:73263800-73288800	Weak transcription	Colon Smooth Muscle	Colon
19	chr11:73264200-73276800	Weak transcription	Hela-S3	cervix
20	chr11:73264600-73287000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:73264800-73276000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr11:73265200-73266600	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr11:73265400-73287200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:73265600-73266400	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr11:73265600-73266400	Enhancers	Liver	Liver
26	chr11:73265600-73266400	Enhancers	GM12878-XiMat	blood
27	chr11:73265600-73266800	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr11:73265600-73267200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:73265600-73267200	Enhancers	HepG2	liver
30	chr11:73265800-73266200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr11:73265800-73266200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr11:73265800-73266200	Enhancers	Brain Angular Gyrus	brain
33	chr11:73265800-73266200	Enhancers	Brain Hippocampus Middle	brain
34	chr11:73265800-73266200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr11:73265800-73266400	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr11:73265800-73266400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr11:73265800-73266400	Enhancers	H9 Cell Line	embryonic stem cell
38	chr11:73265800-73266400	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr11:73265800-73266400	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr11:73265800-73266400	Enhancers	Brain Cingulate Gyrus	brain
41	chr11:73265800-73266400	Enhancers	A549	lung
42	chr11:73265800-73266400	Enhancers	HUVEC	blood vessel
43	chr11:73265800-73266600	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr11:73265800-73266600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr11:73265800-73266600	Enhancers	Fetal Intestine Large	intestine
46	chr11:73265800-73266600	Enhancers	Fetal Intestine Small	intestine
47	chr11:73265800-73267200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr11:73265800-73267200	Strong transcription	Primary T cells from cord blood	blood
49	chr11:73265800-73267400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr11:73265800-73267400	Enhancers	Fetal Heart	heart

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